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From sma...@apache.org
Subject [01/32] airavata-sandbox git commit: adding jupyter note books for Airavata
Date Tue, 09 Aug 2016 18:00:41 GMT
Repository: airavata-sandbox
Updated Branches:
  refs/heads/master 4231ac353 -> 2352c0ffa


http://git-wip-us.apache.org/repos/asf/airavata-sandbox/blob/75eb96c2/Interacting_with_Airavata_using_ipython_Notebook/create-experiment/thrift/server/__init__.py
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diff --git a/Interacting_with_Airavata_using_ipython_Notebook/create-experiment/thrift/server/__init__.py b/Interacting_with_Airavata_using_ipython_Notebook/create-experiment/thrift/server/__init__.py
new file mode 100644
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--- /dev/null
+++ b/Interacting_with_Airavata_using_ipython_Notebook/create-experiment/thrift/server/__init__.py
@@ -0,0 +1,20 @@
+#
+# Licensed to the Apache Software Foundation (ASF) under one
+# or more contributor license agreements. See the NOTICE file
+# distributed with this work for additional information
+# regarding copyright ownership. The ASF licenses this file
+# to you under the Apache License, Version 2.0 (the
+# "License"); you may not use this file except in compliance
+# with the License. You may obtain a copy of the License at
+#
+#   http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing,
+# software distributed under the License is distributed on an
+# "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+# KIND, either express or implied. See the License for the
+# specific language governing permissions and limitations
+# under the License.
+#
+
+__all__ = ['TServer', 'TNonblockingServer']

http://git-wip-us.apache.org/repos/asf/airavata-sandbox/blob/75eb96c2/Interacting_with_Airavata_using_ipython_Notebook/create-experiment/thrift/transport/THttpClient.py
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diff --git a/Interacting_with_Airavata_using_ipython_Notebook/create-experiment/thrift/transport/THttpClient.py b/Interacting_with_Airavata_using_ipython_Notebook/create-experiment/thrift/transport/THttpClient.py
new file mode 100644
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--- /dev/null
+++ b/Interacting_with_Airavata_using_ipython_Notebook/create-experiment/thrift/transport/THttpClient.py
@@ -0,0 +1,147 @@
+#
+# Licensed to the Apache Software Foundation (ASF) under one
+# or more contributor license agreements. See the NOTICE file
+# distributed with this work for additional information
+# regarding copyright ownership. The ASF licenses this file
+# to you under the Apache License, Version 2.0 (the
+# "License"); you may not use this file except in compliance
+# with the License. You may obtain a copy of the License at
+#
+#   http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing,
+# software distributed under the License is distributed on an
+# "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+# KIND, either express or implied. See the License for the
+# specific language governing permissions and limitations
+# under the License.
+#
+
+import httplib
+import os
+import socket
+import sys
+import urllib
+import urlparse
+import warnings
+
+from thrift.transport.TTransport import *
+
+
+class THttpClient(TTransportBase):
+  """Http implementation of TTransport base."""
+
+  def __init__(self, uri_or_host, port=None, path=None):
+    """THttpClient supports two different types constructor parameters.
+
+    THttpClient(host, port, path) - deprecated
+    THttpClient(uri)
+
+    Only the second supports https.
+    """
+    if port is not None:
+      warnings.warn(
+        "Please use the THttpClient('http://host:port/path') syntax",
+        DeprecationWarning,
+        stacklevel=2)
+      self.host = uri_or_host
+      self.port = port
+      assert path
+      self.path = path
+      self.scheme = 'http'
+    else:
+      parsed = urlparse.urlparse(uri_or_host)
+      self.scheme = parsed.scheme
+      assert self.scheme in ('http', 'https')
+      if self.scheme == 'http':
+        self.port = parsed.port or httplib.HTTP_PORT
+      elif self.scheme == 'https':
+        self.port = parsed.port or httplib.HTTPS_PORT
+      self.host = parsed.hostname
+      self.path = parsed.path
+      if parsed.query:
+        self.path += '?%s' % parsed.query
+    self.__wbuf = StringIO()
+    self.__http = None
+    self.__timeout = None
+    self.__custom_headers = None
+
+  def open(self):
+    if self.scheme == 'http':
+      self.__http = httplib.HTTP(self.host, self.port)
+    else:
+      self.__http = httplib.HTTPS(self.host, self.port)
+
+  def close(self):
+    self.__http.close()
+    self.__http = None
+
+  def isOpen(self):
+    return self.__http is not None
+
+  def setTimeout(self, ms):
+    if not hasattr(socket, 'getdefaulttimeout'):
+      raise NotImplementedError
+
+    if ms is None:
+      self.__timeout = None
+    else:
+      self.__timeout = ms / 1000.0
+
+  def setCustomHeaders(self, headers):
+    self.__custom_headers = headers
+
+  def read(self, sz):
+    return self.__http.file.read(sz)
+
+  def write(self, buf):
+    self.__wbuf.write(buf)
+
+  def __withTimeout(f):
+    def _f(*args, **kwargs):
+      orig_timeout = socket.getdefaulttimeout()
+      socket.setdefaulttimeout(args[0].__timeout)
+      result = f(*args, **kwargs)
+      socket.setdefaulttimeout(orig_timeout)
+      return result
+    return _f
+
+  def flush(self):
+    if self.isOpen():
+      self.close()
+    self.open()
+
+    # Pull data out of buffer
+    data = self.__wbuf.getvalue()
+    self.__wbuf = StringIO()
+
+    # HTTP request
+    self.__http.putrequest('POST', self.path)
+
+    # Write headers
+    self.__http.putheader('Host', self.host)
+    self.__http.putheader('Content-Type', 'application/x-thrift')
+    self.__http.putheader('Content-Length', str(len(data)))
+
+    if not self.__custom_headers or 'User-Agent' not in self.__custom_headers:
+      user_agent = 'Python/THttpClient'
+      script = os.path.basename(sys.argv[0])
+      if script:
+        user_agent = '%s (%s)' % (user_agent, urllib.quote(script))
+      self.__http.putheader('User-Agent', user_agent)
+
+    if self.__custom_headers:
+        for key, val in self.__custom_headers.iteritems():
+            self.__http.putheader(key, val)
+
+    self.__http.endheaders()
+
+    # Write payload
+    self.__http.send(data)
+
+    # Get reply to flush the request
+    self.code, self.message, self.headers = self.__http.getreply()
+
+  # Decorate if we know how to timeout
+  if hasattr(socket, 'getdefaulttimeout'):
+    flush = __withTimeout(flush)

http://git-wip-us.apache.org/repos/asf/airavata-sandbox/blob/75eb96c2/Interacting_with_Airavata_using_ipython_Notebook/create-experiment/thrift/transport/TSSLSocket.py
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diff --git a/Interacting_with_Airavata_using_ipython_Notebook/create-experiment/thrift/transport/TSSLSocket.py b/Interacting_with_Airavata_using_ipython_Notebook/create-experiment/thrift/transport/TSSLSocket.py
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--- /dev/null
+++ b/Interacting_with_Airavata_using_ipython_Notebook/create-experiment/thrift/transport/TSSLSocket.py
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+#
+# Licensed to the Apache Software Foundation (ASF) under one
+# or more contributor license agreements. See the NOTICE file
+# distributed with this work for additional information
+# regarding copyright ownership. The ASF licenses this file
+# to you under the Apache License, Version 2.0 (the
+# "License"); you may not use this file except in compliance
+# with the License. You may obtain a copy of the License at
+#
+#   http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing,
+# software distributed under the License is distributed on an
+# "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+# KIND, either express or implied. See the License for the
+# specific language governing permissions and limitations
+# under the License.
+#
+
+import os
+import socket
+import ssl
+
+from thrift.transport import TSocket
+from thrift.transport.TTransport import TTransportException
+
+
+class TSSLSocket(TSocket.TSocket):
+  """
+  SSL implementation of client-side TSocket
+
+  This class creates outbound sockets wrapped using the
+  python standard ssl module for encrypted connections.
+
+  The protocol used is set using the class variable
+  SSL_VERSION, which must be one of ssl.PROTOCOL_* and
+  defaults to  ssl.PROTOCOL_TLSv1 for greatest security.
+  """
+  SSL_VERSION = ssl.PROTOCOL_TLSv1
+
+  def __init__(self,
+               host='localhost',
+               port=9090,
+               validate=True,
+               ca_certs=None,
+               keyfile=None,
+               certfile=None,
+               unix_socket=None):
+    """Create SSL TSocket
+
+    @param validate: Set to False to disable SSL certificate validation
+    @type validate: bool
+    @param ca_certs: Filename to the Certificate Authority pem file, possibly a
+    file downloaded from: http://curl.haxx.se/ca/cacert.pem  This is passed to
+    the ssl_wrap function as the 'ca_certs' parameter.
+    @type ca_certs: str
+    @param keyfile: The private key
+    @type keyfile: str
+    @param certfile: The cert file
+    @type certfile: str
+    
+    Raises an IOError exception if validate is True and the ca_certs file is
+    None, not present or unreadable.
+    """
+    self.validate = validate
+    self.is_valid = False
+    self.peercert = None
+    if not validate:
+      self.cert_reqs = ssl.CERT_NONE
+    else:
+      self.cert_reqs = ssl.CERT_REQUIRED
+    self.ca_certs = ca_certs
+    self.keyfile = keyfile
+    self.certfile = certfile
+    if validate:
+      if ca_certs is None or not os.access(ca_certs, os.R_OK):
+        raise IOError('Certificate Authority ca_certs file "%s" '
+                      'is not readable, cannot validate SSL '
+                      'certificates.' % (ca_certs))
+    TSocket.TSocket.__init__(self, host, port, unix_socket)
+
+  def open(self):
+    try:
+      res0 = self._resolveAddr()
+      for res in res0:
+        sock_family, sock_type = res[0:2]
+        ip_port = res[4]
+        plain_sock = socket.socket(sock_family, sock_type)
+        self.handle = ssl.wrap_socket(plain_sock,
+                                      ssl_version=self.SSL_VERSION,
+                                      do_handshake_on_connect=True,
+                                      ca_certs=self.ca_certs,
+                                      keyfile=self.keyfile,
+                                      certfile=self.certfile,
+                                      cert_reqs=self.cert_reqs)
+        self.handle.settimeout(self._timeout)
+        try:
+          self.handle.connect(ip_port)
+        except socket.error, e:
+          if res is not res0[-1]:
+            continue
+          else:
+            raise e
+        break
+    except socket.error, e:
+      if self._unix_socket:
+        message = 'Could not connect to secure socket %s: %s' \
+                % (self._unix_socket, e)
+      else:
+        message = 'Could not connect to %s:%d: %s' % (self.host, self.port, e)
+      raise TTransportException(type=TTransportException.NOT_OPEN,
+                                message=message)
+    if self.validate:
+      self._validate_cert()
+
+  def _validate_cert(self):
+    """internal method to validate the peer's SSL certificate, and to check the
+    commonName of the certificate to ensure it matches the hostname we
+    used to make this connection.  Does not support subjectAltName records
+    in certificates.
+
+    raises TTransportException if the certificate fails validation.
+    """
+    cert = self.handle.getpeercert()
+    self.peercert = cert
+    if 'subject' not in cert:
+      raise TTransportException(
+        type=TTransportException.NOT_OPEN,
+        message='No SSL certificate found from %s:%s' % (self.host, self.port))
+    fields = cert['subject']
+    for field in fields:
+      # ensure structure we get back is what we expect
+      if not isinstance(field, tuple):
+        continue
+      cert_pair = field[0]
+      if len(cert_pair) < 2:
+        continue
+      cert_key, cert_value = cert_pair[0:2]
+      if cert_key != 'commonName':
+        continue
+      certhost = cert_value
+      # this check should be performed by some sort of Access Manager
+      if certhost == self.host:
+        # success, cert commonName matches desired hostname
+        self.is_valid = True
+        return
+      else:
+        raise TTransportException(
+          type=TTransportException.UNKNOWN,
+          message='Hostname we connected to "%s" doesn\'t match certificate '
+                  'provided commonName "%s"' % (self.host, certhost))
+    raise TTransportException(
+      type=TTransportException.UNKNOWN,
+      message='Could not validate SSL certificate from '
+              'host "%s".  Cert=%s' % (self.host, cert))
+
+
+class TSSLServerSocket(TSocket.TServerSocket):
+  """SSL implementation of TServerSocket
+
+  This uses the ssl module's wrap_socket() method to provide SSL
+  negotiated encryption.
+  """
+  SSL_VERSION = ssl.PROTOCOL_TLSv1
+
+  def __init__(self,
+               host=None,
+               port=9090,
+               certfile='cert.pem',
+               unix_socket=None):
+    """Initialize a TSSLServerSocket
+
+    @param certfile: filename of the server certificate, defaults to cert.pem
+    @type certfile: str
+    @param host: The hostname or IP to bind the listen socket to,
+                 i.e. 'localhost' for only allowing local network connections.
+                 Pass None to bind to all interfaces.
+    @type host: str
+    @param port: The port to listen on for inbound connections.
+    @type port: int
+    """
+    self.setCertfile(certfile)
+    TSocket.TServerSocket.__init__(self, host, port)
+
+  def setCertfile(self, certfile):
+    """Set or change the server certificate file used to wrap new connections.
+
+    @param certfile: The filename of the server certificate,
+                     i.e. '/etc/certs/server.pem'
+    @type certfile: str
+
+    Raises an IOError exception if the certfile is not present or unreadable.
+    """
+    if not os.access(certfile, os.R_OK):
+      raise IOError('No such certfile found: %s' % (certfile))
+    self.certfile = certfile
+
+  def accept(self):
+    plain_client, addr = self.handle.accept()
+    try:
+      client = ssl.wrap_socket(plain_client, certfile=self.certfile,
+                      server_side=True, ssl_version=self.SSL_VERSION)
+    except ssl.SSLError, ssl_exc:
+      # failed handshake/ssl wrap, close socket to client
+      plain_client.close()
+      # raise ssl_exc
+      # We can't raise the exception, because it kills most TServer derived
+      # serve() methods.
+      # Instead, return None, and let the TServer instance deal with it in
+      # other exception handling.  (but TSimpleServer dies anyway)
+      return None
+    result = TSocket.TSocket()
+    result.setHandle(client)
+    return result

http://git-wip-us.apache.org/repos/asf/airavata-sandbox/blob/75eb96c2/Interacting_with_Airavata_using_ipython_Notebook/create-experiment/thrift/transport/TSSLSocket.pyc
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diff --git a/Interacting_with_Airavata_using_ipython_Notebook/create-experiment/thrift/transport/TSSLSocket.pyc b/Interacting_with_Airavata_using_ipython_Notebook/create-experiment/thrift/transport/TSSLSocket.pyc
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http://git-wip-us.apache.org/repos/asf/airavata-sandbox/blob/75eb96c2/Interacting_with_Airavata_using_ipython_Notebook/create-experiment/thrift/transport/TSocket.py
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diff --git a/Interacting_with_Airavata_using_ipython_Notebook/create-experiment/thrift/transport/TSocket.py b/Interacting_with_Airavata_using_ipython_Notebook/create-experiment/thrift/transport/TSocket.py
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+#
+# Licensed to the Apache Software Foundation (ASF) under one
+# or more contributor license agreements. See the NOTICE file
+# distributed with this work for additional information
+# regarding copyright ownership. The ASF licenses this file
+# to you under the Apache License, Version 2.0 (the
+# "License"); you may not use this file except in compliance
+# with the License. You may obtain a copy of the License at
+#
+#   http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing,
+# software distributed under the License is distributed on an
+# "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+# KIND, either express or implied. See the License for the
+# specific language governing permissions and limitations
+# under the License.
+#
+
+import errno
+import os
+import socket
+import sys
+
+from thrift.transport.TTransport import *
+
+
+class TSocketBase(TTransportBase):
+  def _resolveAddr(self):
+    if self._unix_socket is not None:
+      return [(socket.AF_UNIX, socket.SOCK_STREAM, None, None,
+               self._unix_socket)]
+    else:
+      return socket.getaddrinfo(self.host,
+                                self.port,
+                                socket.AF_UNSPEC,
+                                socket.SOCK_STREAM,
+                                0,
+                                socket.AI_PASSIVE | socket.AI_ADDRCONFIG)
+
+  def close(self):
+    if self.handle:
+      self.handle.close()
+      self.handle = None
+
+
+class TSocket(TSocketBase):
+  """Socket implementation of TTransport base."""
+
+  def __init__(self, host='localhost', port=9090, unix_socket=None):
+    """Initialize a TSocket
+
+    @param host(str)  The host to connect to.
+    @param port(int)  The (TCP) port to connect to.
+    @param unix_socket(str)  The filename of a unix socket to connect to.
+                             (host and port will be ignored.)
+    """
+    self.host = host
+    self.port = port
+    self.handle = None
+    self._unix_socket = unix_socket
+    self._timeout = None
+
+  def setHandle(self, h):
+    self.handle = h
+
+  def isOpen(self):
+    return self.handle is not None
+
+  def setTimeout(self, ms):
+    if ms is None:
+      self._timeout = None
+    else:
+      self._timeout = ms / 1000.0
+
+    if self.handle is not None:
+      self.handle.settimeout(self._timeout)
+
+  def open(self):
+    try:
+      res0 = self._resolveAddr()
+      for res in res0:
+        self.handle = socket.socket(res[0], res[1])
+        self.handle.settimeout(self._timeout)
+        try:
+          self.handle.connect(res[4])
+        except socket.error, e:
+          if res is not res0[-1]:
+            continue
+          else:
+            raise e
+        break
+    except socket.error, e:
+      if self._unix_socket:
+        message = 'Could not connect to socket %s' % self._unix_socket
+      else:
+        message = 'Could not connect to %s:%d' % (self.host, self.port)
+      raise TTransportException(type=TTransportException.NOT_OPEN,
+                                message=message)
+
+  def read(self, sz):
+    try:
+      buff = self.handle.recv(sz)
+    except socket.error, e:
+      if (e.args[0] == errno.ECONNRESET and
+          (sys.platform == 'darwin' or sys.platform.startswith('freebsd'))):
+        # freebsd and Mach don't follow POSIX semantic of recv
+        # and fail with ECONNRESET if peer performed shutdown.
+        # See corresponding comment and code in TSocket::read()
+        # in lib/cpp/src/transport/TSocket.cpp.
+        self.close()
+        # Trigger the check to raise the END_OF_FILE exception below.
+        buff = ''
+      else:
+        raise
+    if len(buff) == 0:
+      raise TTransportException(type=TTransportException.END_OF_FILE,
+                                message='TSocket read 0 bytes')
+    return buff
+
+  def write(self, buff):
+    if not self.handle:
+      raise TTransportException(type=TTransportException.NOT_OPEN,
+                                message='Transport not open')
+    sent = 0
+    have = len(buff)
+    while sent < have:
+      plus = self.handle.send(buff)
+      if plus == 0:
+        raise TTransportException(type=TTransportException.END_OF_FILE,
+                                  message='TSocket sent 0 bytes')
+      sent += plus
+      buff = buff[plus:]
+
+  def flush(self):
+    pass
+
+
+class TServerSocket(TSocketBase, TServerTransportBase):
+  """Socket implementation of TServerTransport base."""
+
+  def __init__(self, host=None, port=9090, unix_socket=None):
+    self.host = host
+    self.port = port
+    self._unix_socket = unix_socket
+    self.handle = None
+
+  def listen(self):
+    res0 = self._resolveAddr()
+    for res in res0:
+      if res[0] is socket.AF_INET6 or res is res0[-1]:
+        break
+
+    # We need remove the old unix socket if the file exists and
+    # nobody is listening on it.
+    if self._unix_socket:
+      tmp = socket.socket(res[0], res[1])
+      try:
+        tmp.connect(res[4])
+      except socket.error, err:
+        eno, message = err.args
+        if eno == errno.ECONNREFUSED:
+          os.unlink(res[4])
+
+    self.handle = socket.socket(res[0], res[1])
+    self.handle.setsockopt(socket.SOL_SOCKET, socket.SO_REUSEADDR, 1)
+    if hasattr(self.handle, 'settimeout'):
+      self.handle.settimeout(None)
+    self.handle.bind(res[4])
+    self.handle.listen(128)
+
+  def accept(self):
+    client, addr = self.handle.accept()
+    result = TSocket()
+    result.setHandle(client)
+    return result

http://git-wip-us.apache.org/repos/asf/airavata-sandbox/blob/75eb96c2/Interacting_with_Airavata_using_ipython_Notebook/create-experiment/thrift/transport/TSocket.pyc
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diff --git a/Interacting_with_Airavata_using_ipython_Notebook/create-experiment/thrift/transport/TSocket.pyc b/Interacting_with_Airavata_using_ipython_Notebook/create-experiment/thrift/transport/TSocket.pyc
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http://git-wip-us.apache.org/repos/asf/airavata-sandbox/blob/75eb96c2/Interacting_with_Airavata_using_ipython_Notebook/create-experiment/thrift/transport/TTransport.py
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diff --git a/Interacting_with_Airavata_using_ipython_Notebook/create-experiment/thrift/transport/TTransport.py b/Interacting_with_Airavata_using_ipython_Notebook/create-experiment/thrift/transport/TTransport.py
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+#
+# Licensed to the Apache Software Foundation (ASF) under one
+# or more contributor license agreements. See the NOTICE file
+# distributed with this work for additional information
+# regarding copyright ownership. The ASF licenses this file
+# to you under the Apache License, Version 2.0 (the
+# "License"); you may not use this file except in compliance
+# with the License. You may obtain a copy of the License at
+#
+#   http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing,
+# software distributed under the License is distributed on an
+# "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+# KIND, either express or implied. See the License for the
+# specific language governing permissions and limitations
+# under the License.
+#
+
+from cStringIO import StringIO
+from struct import pack, unpack
+from thrift.Thrift import TException
+
+
+class TTransportException(TException):
+  """Custom Transport Exception class"""
+
+  UNKNOWN = 0
+  NOT_OPEN = 1
+  ALREADY_OPEN = 2
+  TIMED_OUT = 3
+  END_OF_FILE = 4
+
+  def __init__(self, type=UNKNOWN, message=None):
+    TException.__init__(self, message)
+    self.type = type
+
+
+class TTransportBase:
+  """Base class for Thrift transport layer."""
+
+  def isOpen(self):
+    pass
+
+  def open(self):
+    pass
+
+  def close(self):
+    pass
+
+  def read(self, sz):
+    pass
+
+  def readAll(self, sz):
+    buff = ''
+    have = 0
+    while (have < sz):
+      chunk = self.read(sz - have)
+      have += len(chunk)
+      buff += chunk
+
+      if len(chunk) == 0:
+        raise EOFError()
+
+    return buff
+
+  def write(self, buf):
+    pass
+
+  def flush(self):
+    pass
+
+
+# This class should be thought of as an interface.
+class CReadableTransport:
+  """base class for transports that are readable from C"""
+
+  # TODO(dreiss): Think about changing this interface to allow us to use
+  #               a (Python, not c) StringIO instead, because it allows
+  #               you to write after reading.
+
+  # NOTE: This is a classic class, so properties will NOT work
+  #       correctly for setting.
+  @property
+  def cstringio_buf(self):
+    """A cStringIO buffer that contains the current chunk we are reading."""
+    pass
+
+  def cstringio_refill(self, partialread, reqlen):
+    """Refills cstringio_buf.
+
+    Returns the currently used buffer (which can but need not be the same as
+    the old cstringio_buf). partialread is what the C code has read from the
+    buffer, and should be inserted into the buffer before any more reads.  The
+    return value must be a new, not borrowed reference.  Something along the
+    lines of self._buf should be fine.
+
+    If reqlen bytes can't be read, throw EOFError.
+    """
+    pass
+
+
+class TServerTransportBase:
+  """Base class for Thrift server transports."""
+
+  def listen(self):
+    pass
+
+  def accept(self):
+    pass
+
+  def close(self):
+    pass
+
+
+class TTransportFactoryBase:
+  """Base class for a Transport Factory"""
+
+  def getTransport(self, trans):
+    return trans
+
+
+class TBufferedTransportFactory:
+  """Factory transport that builds buffered transports"""
+
+  def getTransport(self, trans):
+    buffered = TBufferedTransport(trans)
+    return buffered
+
+
+class TBufferedTransport(TTransportBase, CReadableTransport):
+  """Class that wraps another transport and buffers its I/O.
+
+  The implementation uses a (configurable) fixed-size read buffer
+  but buffers all writes until a flush is performed.
+  """
+  DEFAULT_BUFFER = 4096
+
+  def __init__(self, trans, rbuf_size=DEFAULT_BUFFER):
+    self.__trans = trans
+    self.__wbuf = StringIO()
+    self.__rbuf = StringIO("")
+    self.__rbuf_size = rbuf_size
+
+  def isOpen(self):
+    return self.__trans.isOpen()
+
+  def open(self):
+    return self.__trans.open()
+
+  def close(self):
+    return self.__trans.close()
+
+  def read(self, sz):
+    ret = self.__rbuf.read(sz)
+    if len(ret) != 0:
+      return ret
+
+    self.__rbuf = StringIO(self.__trans.read(max(sz, self.__rbuf_size)))
+    return self.__rbuf.read(sz)
+
+  def write(self, buf):
+    self.__wbuf.write(buf)
+
+  def flush(self):
+    out = self.__wbuf.getvalue()
+    # reset wbuf before write/flush to preserve state on underlying failure
+    self.__wbuf = StringIO()
+    self.__trans.write(out)
+    self.__trans.flush()
+
+  # Implement the CReadableTransport interface.
+  @property
+  def cstringio_buf(self):
+    return self.__rbuf
+
+  def cstringio_refill(self, partialread, reqlen):
+    retstring = partialread
+    if reqlen < self.__rbuf_size:
+      # try to make a read of as much as we can.
+      retstring += self.__trans.read(self.__rbuf_size)
+
+    # but make sure we do read reqlen bytes.
+    if len(retstring) < reqlen:
+      retstring += self.__trans.readAll(reqlen - len(retstring))
+
+    self.__rbuf = StringIO(retstring)
+    return self.__rbuf
+
+
+class TMemoryBuffer(TTransportBase, CReadableTransport):
+  """Wraps a cStringIO object as a TTransport.
+
+  NOTE: Unlike the C++ version of this class, you cannot write to it
+        then immediately read from it.  If you want to read from a
+        TMemoryBuffer, you must either pass a string to the constructor.
+  TODO(dreiss): Make this work like the C++ version.
+  """
+
+  def __init__(self, value=None):
+    """value -- a value to read from for stringio
+
+    If value is set, this will be a transport for reading,
+    otherwise, it is for writing"""
+    if value is not None:
+      self._buffer = StringIO(value)
+    else:
+      self._buffer = StringIO()
+
+  def isOpen(self):
+    return not self._buffer.closed
+
+  def open(self):
+    pass
+
+  def close(self):
+    self._buffer.close()
+
+  def read(self, sz):
+    return self._buffer.read(sz)
+
+  def write(self, buf):
+    self._buffer.write(buf)
+
+  def flush(self):
+    pass
+
+  def getvalue(self):
+    return self._buffer.getvalue()
+
+  # Implement the CReadableTransport interface.
+  @property
+  def cstringio_buf(self):
+    return self._buffer
+
+  def cstringio_refill(self, partialread, reqlen):
+    # only one shot at reading...
+    raise EOFError()
+
+
+class TFramedTransportFactory:
+  """Factory transport that builds framed transports"""
+
+  def getTransport(self, trans):
+    framed = TFramedTransport(trans)
+    return framed
+
+
+class TFramedTransport(TTransportBase, CReadableTransport):
+  """Class that wraps another transport and frames its I/O when writing."""
+
+  def __init__(self, trans,):
+    self.__trans = trans
+    self.__rbuf = StringIO()
+    self.__wbuf = StringIO()
+
+  def isOpen(self):
+    return self.__trans.isOpen()
+
+  def open(self):
+    return self.__trans.open()
+
+  def close(self):
+    return self.__trans.close()
+
+  def read(self, sz):
+    ret = self.__rbuf.read(sz)
+    if len(ret) != 0:
+      return ret
+
+    self.readFrame()
+    return self.__rbuf.read(sz)
+
+  def readFrame(self):
+    buff = self.__trans.readAll(4)
+    sz, = unpack('!i', buff)
+    self.__rbuf = StringIO(self.__trans.readAll(sz))
+
+  def write(self, buf):
+    self.__wbuf.write(buf)
+
+  def flush(self):
+    wout = self.__wbuf.getvalue()
+    wsz = len(wout)
+    # reset wbuf before write/flush to preserve state on underlying failure
+    self.__wbuf = StringIO()
+    # N.B.: Doing this string concatenation is WAY cheaper than making
+    # two separate calls to the underlying socket object. Socket writes in
+    # Python turn out to be REALLY expensive, but it seems to do a pretty
+    # good job of managing string buffer operations without excessive copies
+    buf = pack("!i", wsz) + wout
+    self.__trans.write(buf)
+    self.__trans.flush()
+
+  # Implement the CReadableTransport interface.
+  @property
+  def cstringio_buf(self):
+    return self.__rbuf
+
+  def cstringio_refill(self, prefix, reqlen):
+    # self.__rbuf will already be empty here because fastbinary doesn't
+    # ask for a refill until the previous buffer is empty.  Therefore,
+    # we can start reading new frames immediately.
+    while len(prefix) < reqlen:
+      self.readFrame()
+      prefix += self.__rbuf.getvalue()
+    self.__rbuf = StringIO(prefix)
+    return self.__rbuf
+
+
+class TFileObjectTransport(TTransportBase):
+  """Wraps a file-like object to make it work as a Thrift transport."""
+
+  def __init__(self, fileobj):
+    self.fileobj = fileobj
+
+  def isOpen(self):
+    return True
+
+  def close(self):
+    self.fileobj.close()
+
+  def read(self, sz):
+    return self.fileobj.read(sz)
+
+  def write(self, buf):
+    self.fileobj.write(buf)
+
+  def flush(self):
+    self.fileobj.flush()

http://git-wip-us.apache.org/repos/asf/airavata-sandbox/blob/75eb96c2/Interacting_with_Airavata_using_ipython_Notebook/create-experiment/thrift/transport/TTransport.pyc
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diff --git a/Interacting_with_Airavata_using_ipython_Notebook/create-experiment/thrift/transport/TTransport.pyc b/Interacting_with_Airavata_using_ipython_Notebook/create-experiment/thrift/transport/TTransport.pyc
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http://git-wip-us.apache.org/repos/asf/airavata-sandbox/blob/75eb96c2/Interacting_with_Airavata_using_ipython_Notebook/create-experiment/thrift/transport/TTwisted.py
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diff --git a/Interacting_with_Airavata_using_ipython_Notebook/create-experiment/thrift/transport/TTwisted.py b/Interacting_with_Airavata_using_ipython_Notebook/create-experiment/thrift/transport/TTwisted.py
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+#
+# Licensed to the Apache Software Foundation (ASF) under one
+# or more contributor license agreements. See the NOTICE file
+# distributed with this work for additional information
+# regarding copyright ownership. The ASF licenses this file
+# to you under the Apache License, Version 2.0 (the
+# "License"); you may not use this file except in compliance
+# with the License. You may obtain a copy of the License at
+#
+#   http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing,
+# software distributed under the License is distributed on an
+# "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+# KIND, either express or implied. See the License for the
+# specific language governing permissions and limitations
+# under the License.
+#
+
+from cStringIO import StringIO
+
+from zope.interface import implements, Interface, Attribute
+from twisted.internet.protocol import Protocol, ServerFactory, ClientFactory, \
+    connectionDone
+from twisted.internet import defer
+from twisted.protocols import basic
+from twisted.python import log
+from twisted.web import server, resource, http
+
+from thrift.transport import TTransport
+
+
+class TMessageSenderTransport(TTransport.TTransportBase):
+
+    def __init__(self):
+        self.__wbuf = StringIO()
+
+    def write(self, buf):
+        self.__wbuf.write(buf)
+
+    def flush(self):
+        msg = self.__wbuf.getvalue()
+        self.__wbuf = StringIO()
+        self.sendMessage(msg)
+
+    def sendMessage(self, message):
+        raise NotImplementedError
+
+
+class TCallbackTransport(TMessageSenderTransport):
+
+    def __init__(self, func):
+        TMessageSenderTransport.__init__(self)
+        self.func = func
+
+    def sendMessage(self, message):
+        self.func(message)
+
+
+class ThriftClientProtocol(basic.Int32StringReceiver):
+
+    MAX_LENGTH = 2 ** 31 - 1
+
+    def __init__(self, client_class, iprot_factory, oprot_factory=None):
+        self._client_class = client_class
+        self._iprot_factory = iprot_factory
+        if oprot_factory is None:
+            self._oprot_factory = iprot_factory
+        else:
+            self._oprot_factory = oprot_factory
+
+        self.recv_map = {}
+        self.started = defer.Deferred()
+
+    def dispatch(self, msg):
+        self.sendString(msg)
+
+    def connectionMade(self):
+        tmo = TCallbackTransport(self.dispatch)
+        self.client = self._client_class(tmo, self._oprot_factory)
+        self.started.callback(self.client)
+
+    def connectionLost(self, reason=connectionDone):
+        for k, v in self.client._reqs.iteritems():
+            tex = TTransport.TTransportException(
+                type=TTransport.TTransportException.END_OF_FILE,
+                message='Connection closed')
+            v.errback(tex)
+
+    def stringReceived(self, frame):
+        tr = TTransport.TMemoryBuffer(frame)
+        iprot = self._iprot_factory.getProtocol(tr)
+        (fname, mtype, rseqid) = iprot.readMessageBegin()
+
+        try:
+            method = self.recv_map[fname]
+        except KeyError:
+            method = getattr(self.client, 'recv_' + fname)
+            self.recv_map[fname] = method
+
+        method(iprot, mtype, rseqid)
+
+
+class ThriftServerProtocol(basic.Int32StringReceiver):
+
+    MAX_LENGTH = 2 ** 31 - 1
+
+    def dispatch(self, msg):
+        self.sendString(msg)
+
+    def processError(self, error):
+        self.transport.loseConnection()
+
+    def processOk(self, _, tmo):
+        msg = tmo.getvalue()
+
+        if len(msg) > 0:
+            self.dispatch(msg)
+
+    def stringReceived(self, frame):
+        tmi = TTransport.TMemoryBuffer(frame)
+        tmo = TTransport.TMemoryBuffer()
+
+        iprot = self.factory.iprot_factory.getProtocol(tmi)
+        oprot = self.factory.oprot_factory.getProtocol(tmo)
+
+        d = self.factory.processor.process(iprot, oprot)
+        d.addCallbacks(self.processOk, self.processError,
+            callbackArgs=(tmo,))
+
+
+class IThriftServerFactory(Interface):
+
+    processor = Attribute("Thrift processor")
+
+    iprot_factory = Attribute("Input protocol factory")
+
+    oprot_factory = Attribute("Output protocol factory")
+
+
+class IThriftClientFactory(Interface):
+
+    client_class = Attribute("Thrift client class")
+
+    iprot_factory = Attribute("Input protocol factory")
+
+    oprot_factory = Attribute("Output protocol factory")
+
+
+class ThriftServerFactory(ServerFactory):
+
+    implements(IThriftServerFactory)
+
+    protocol = ThriftServerProtocol
+
+    def __init__(self, processor, iprot_factory, oprot_factory=None):
+        self.processor = processor
+        self.iprot_factory = iprot_factory
+        if oprot_factory is None:
+            self.oprot_factory = iprot_factory
+        else:
+            self.oprot_factory = oprot_factory
+
+
+class ThriftClientFactory(ClientFactory):
+
+    implements(IThriftClientFactory)
+
+    protocol = ThriftClientProtocol
+
+    def __init__(self, client_class, iprot_factory, oprot_factory=None):
+        self.client_class = client_class
+        self.iprot_factory = iprot_factory
+        if oprot_factory is None:
+            self.oprot_factory = iprot_factory
+        else:
+            self.oprot_factory = oprot_factory
+
+    def buildProtocol(self, addr):
+        p = self.protocol(self.client_class, self.iprot_factory,
+            self.oprot_factory)
+        p.factory = self
+        return p
+
+
+class ThriftResource(resource.Resource):
+
+    allowedMethods = ('POST',)
+
+    def __init__(self, processor, inputProtocolFactory,
+        outputProtocolFactory=None):
+        resource.Resource.__init__(self)
+        self.inputProtocolFactory = inputProtocolFactory
+        if outputProtocolFactory is None:
+            self.outputProtocolFactory = inputProtocolFactory
+        else:
+            self.outputProtocolFactory = outputProtocolFactory
+        self.processor = processor
+
+    def getChild(self, path, request):
+        return self
+
+    def _cbProcess(self, _, request, tmo):
+        msg = tmo.getvalue()
+        request.setResponseCode(http.OK)
+        request.setHeader("content-type", "application/x-thrift")
+        request.write(msg)
+        request.finish()
+
+    def render_POST(self, request):
+        request.content.seek(0, 0)
+        data = request.content.read()
+        tmi = TTransport.TMemoryBuffer(data)
+        tmo = TTransport.TMemoryBuffer()
+
+        iprot = self.inputProtocolFactory.getProtocol(tmi)
+        oprot = self.outputProtocolFactory.getProtocol(tmo)
+
+        d = self.processor.process(iprot, oprot)
+        d.addCallback(self._cbProcess, request, tmo)
+        return server.NOT_DONE_YET

http://git-wip-us.apache.org/repos/asf/airavata-sandbox/blob/75eb96c2/Interacting_with_Airavata_using_ipython_Notebook/create-experiment/thrift/transport/TZlibTransport.py
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diff --git a/Interacting_with_Airavata_using_ipython_Notebook/create-experiment/thrift/transport/TZlibTransport.py b/Interacting_with_Airavata_using_ipython_Notebook/create-experiment/thrift/transport/TZlibTransport.py
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+#
+# Licensed to the Apache Software Foundation (ASF) under one
+# or more contributor license agreements. See the NOTICE file
+# distributed with this work for additional information
+# regarding copyright ownership. The ASF licenses this file
+# to you under the Apache License, Version 2.0 (the
+# "License"); you may not use this file except in compliance
+# with the License. You may obtain a copy of the License at
+#
+#   http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing,
+# software distributed under the License is distributed on an
+# "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+# KIND, either express or implied. See the License for the
+# specific language governing permissions and limitations
+# under the License.
+#
+
+"""TZlibTransport provides a compressed transport and transport factory
+class, using the python standard library zlib module to implement
+data compression.
+"""
+
+from __future__ import division
+import zlib
+from cStringIO import StringIO
+
+from thrift.transport.TTransport import TTransportBase, CReadableTransport
+
+
+class TZlibTransportFactory(object):
+  """Factory transport that builds zlib compressed transports.
+
+  This factory caches the last single client/transport that it was passed
+  and returns the same TZlibTransport object that was created.
+
+  This caching means the TServer class will get the _same_ transport
+  object for both input and output transports from this factory.
+  (For non-threaded scenarios only, since the cache only holds one object)
+
+  The purpose of this caching is to allocate only one TZlibTransport where
+  only one is really needed (since it must have separate read/write buffers),
+  and makes the statistics from getCompSavings() and getCompRatio()
+  easier to understand.
+  """
+  # class scoped cache of last transport given and zlibtransport returned
+  _last_trans = None
+  _last_z = None
+
+  def getTransport(self, trans, compresslevel=9):
+    """Wrap a transport, trans, with the TZlibTransport
+    compressed transport class, returning a new
+    transport to the caller.
+
+    @param compresslevel: The zlib compression level, ranging
+    from 0 (no compression) to 9 (best compression).  Defaults to 9.
+    @type compresslevel: int
+
+    This method returns a TZlibTransport which wraps the
+    passed C{trans} TTransport derived instance.
+    """
+    if trans == self._last_trans:
+      return self._last_z
+    ztrans = TZlibTransport(trans, compresslevel)
+    self._last_trans = trans
+    self._last_z = ztrans
+    return ztrans
+
+
+class TZlibTransport(TTransportBase, CReadableTransport):
+  """Class that wraps a transport with zlib, compressing writes
+  and decompresses reads, using the python standard
+  library zlib module.
+  """
+  # Read buffer size for the python fastbinary C extension,
+  # the TBinaryProtocolAccelerated class.
+  DEFAULT_BUFFSIZE = 4096
+
+  def __init__(self, trans, compresslevel=9):
+    """Create a new TZlibTransport, wrapping C{trans}, another
+    TTransport derived object.
+
+    @param trans: A thrift transport object, i.e. a TSocket() object.
+    @type trans: TTransport
+    @param compresslevel: The zlib compression level, ranging
+    from 0 (no compression) to 9 (best compression).  Default is 9.
+    @type compresslevel: int
+    """
+    self.__trans = trans
+    self.compresslevel = compresslevel
+    self.__rbuf = StringIO()
+    self.__wbuf = StringIO()
+    self._init_zlib()
+    self._init_stats()
+
+  def _reinit_buffers(self):
+    """Internal method to initialize/reset the internal StringIO objects
+    for read and write buffers.
+    """
+    self.__rbuf = StringIO()
+    self.__wbuf = StringIO()
+
+  def _init_stats(self):
+    """Internal method to reset the internal statistics counters
+    for compression ratios and bandwidth savings.
+    """
+    self.bytes_in = 0
+    self.bytes_out = 0
+    self.bytes_in_comp = 0
+    self.bytes_out_comp = 0
+
+  def _init_zlib(self):
+    """Internal method for setting up the zlib compression and
+    decompression objects.
+    """
+    self._zcomp_read = zlib.decompressobj()
+    self._zcomp_write = zlib.compressobj(self.compresslevel)
+
+  def getCompRatio(self):
+    """Get the current measured compression ratios (in,out) from
+    this transport.
+
+    Returns a tuple of:
+    (inbound_compression_ratio, outbound_compression_ratio)
+
+    The compression ratios are computed as:
+        compressed / uncompressed
+
+    E.g., data that compresses by 10x will have a ratio of: 0.10
+    and data that compresses to half of ts original size will
+    have a ratio of 0.5
+
+    None is returned if no bytes have yet been processed in
+    a particular direction.
+    """
+    r_percent, w_percent = (None, None)
+    if self.bytes_in > 0:
+      r_percent = self.bytes_in_comp / self.bytes_in
+    if self.bytes_out > 0:
+      w_percent = self.bytes_out_comp / self.bytes_out
+    return (r_percent, w_percent)
+
+  def getCompSavings(self):
+    """Get the current count of saved bytes due to data
+    compression.
+
+    Returns a tuple of:
+    (inbound_saved_bytes, outbound_saved_bytes)
+
+    Note: if compression is actually expanding your
+    data (only likely with very tiny thrift objects), then
+    the values returned will be negative.
+    """
+    r_saved = self.bytes_in - self.bytes_in_comp
+    w_saved = self.bytes_out - self.bytes_out_comp
+    return (r_saved, w_saved)
+
+  def isOpen(self):
+    """Return the underlying transport's open status"""
+    return self.__trans.isOpen()
+
+  def open(self):
+    """Open the underlying transport"""
+    self._init_stats()
+    return self.__trans.open()
+
+  def listen(self):
+    """Invoke the underlying transport's listen() method"""
+    self.__trans.listen()
+
+  def accept(self):
+    """Accept connections on the underlying transport"""
+    return self.__trans.accept()
+
+  def close(self):
+    """Close the underlying transport,"""
+    self._reinit_buffers()
+    self._init_zlib()
+    return self.__trans.close()
+
+  def read(self, sz):
+    """Read up to sz bytes from the decompressed bytes buffer, and
+    read from the underlying transport if the decompression
+    buffer is empty.
+    """
+    ret = self.__rbuf.read(sz)
+    if len(ret) > 0:
+      return ret
+    # keep reading from transport until something comes back
+    while True:
+      if self.readComp(sz):
+        break
+    ret = self.__rbuf.read(sz)
+    return ret
+
+  def readComp(self, sz):
+    """Read compressed data from the underlying transport, then
+    decompress it and append it to the internal StringIO read buffer
+    """
+    zbuf = self.__trans.read(sz)
+    zbuf = self._zcomp_read.unconsumed_tail + zbuf
+    buf = self._zcomp_read.decompress(zbuf)
+    self.bytes_in += len(zbuf)
+    self.bytes_in_comp += len(buf)
+    old = self.__rbuf.read()
+    self.__rbuf = StringIO(old + buf)
+    if len(old) + len(buf) == 0:
+      return False
+    return True
+
+  def write(self, buf):
+    """Write some bytes, putting them into the internal write
+    buffer for eventual compression.
+    """
+    self.__wbuf.write(buf)
+
+  def flush(self):
+    """Flush any queued up data in the write buffer and ensure the
+    compression buffer is flushed out to the underlying transport
+    """
+    wout = self.__wbuf.getvalue()
+    if len(wout) > 0:
+      zbuf = self._zcomp_write.compress(wout)
+      self.bytes_out += len(wout)
+      self.bytes_out_comp += len(zbuf)
+    else:
+      zbuf = ''
+    ztail = self._zcomp_write.flush(zlib.Z_SYNC_FLUSH)
+    self.bytes_out_comp += len(ztail)
+    if (len(zbuf) + len(ztail)) > 0:
+      self.__wbuf = StringIO()
+      self.__trans.write(zbuf + ztail)
+    self.__trans.flush()
+
+  @property
+  def cstringio_buf(self):
+    """Implement the CReadableTransport interface"""
+    return self.__rbuf
+
+  def cstringio_refill(self, partialread, reqlen):
+    """Implement the CReadableTransport interface for refill"""
+    retstring = partialread
+    if reqlen < self.DEFAULT_BUFFSIZE:
+      retstring += self.read(self.DEFAULT_BUFFSIZE)
+    while len(retstring) < reqlen:
+      retstring += self.read(reqlen - len(retstring))
+    self.__rbuf = StringIO(retstring)
+    return self.__rbuf

http://git-wip-us.apache.org/repos/asf/airavata-sandbox/blob/75eb96c2/Interacting_with_Airavata_using_ipython_Notebook/create-experiment/thrift/transport/__init__.py
----------------------------------------------------------------------
diff --git a/Interacting_with_Airavata_using_ipython_Notebook/create-experiment/thrift/transport/__init__.py b/Interacting_with_Airavata_using_ipython_Notebook/create-experiment/thrift/transport/__init__.py
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--- /dev/null
+++ b/Interacting_with_Airavata_using_ipython_Notebook/create-experiment/thrift/transport/__init__.py
@@ -0,0 +1,20 @@
+#
+# Licensed to the Apache Software Foundation (ASF) under one
+# or more contributor license agreements. See the NOTICE file
+# distributed with this work for additional information
+# regarding copyright ownership. The ASF licenses this file
+# to you under the Apache License, Version 2.0 (the
+# "License"); you may not use this file except in compliance
+# with the License. You may obtain a copy of the License at
+#
+#   http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing,
+# software distributed under the License is distributed on an
+# "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+# KIND, either express or implied. See the License for the
+# specific language governing permissions and limitations
+# under the License.
+#
+
+__all__ = ['TTransport', 'TSocket', 'THttpClient', 'TZlibTransport']

http://git-wip-us.apache.org/repos/asf/airavata-sandbox/blob/75eb96c2/Interacting_with_Airavata_using_ipython_Notebook/create-experiment/thrift/transport/__init__.pyc
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diff --git a/Interacting_with_Airavata_using_ipython_Notebook/create-experiment/thrift/transport/__init__.pyc b/Interacting_with_Airavata_using_ipython_Notebook/create-experiment/thrift/transport/__init__.pyc
new file mode 100644
index 0000000..6f04147
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