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From shame...@apache.org
Subject [2/2] airavata git commit: Merge branch 'develop' of https://git-wip-us.apache.org/repos/asf/airavata into develop
Date Fri, 25 Mar 2016 18:11:36 GMT
Merge branch 'develop' of https://git-wip-us.apache.org/repos/asf/airavata into develop


Project: http://git-wip-us.apache.org/repos/asf/airavata/repo
Commit: http://git-wip-us.apache.org/repos/asf/airavata/commit/253dee8c
Tree: http://git-wip-us.apache.org/repos/asf/airavata/tree/253dee8c
Diff: http://git-wip-us.apache.org/repos/asf/airavata/diff/253dee8c

Branch: refs/heads/develop
Commit: 253dee8cd8771966b4ae9d8b323e1d9207f61414
Parents: ef4329c fd9b64f
Author: Shameera Rathnayaka <shameerainfo@gmail.com>
Authored: Fri Mar 25 14:11:17 2016 -0400
Committer: Shameera Rathnayaka <shameerainfo@gmail.com>
Committed: Fri Mar 25 14:11:17 2016 -0400

----------------------------------------------------------------------
 .../server/handler/AiravataServerHandler.java   |    55 +-
 .../api/server/handler/utils/DataCatInit.java   |   315 -
 .../server/handler/utils/ReplicaCatInit.java    |   315 +
 .../java/org/apache/airavata/api/Airavata.java  | 40373 +++++++++--------
 .../main/resources/lib/airavata/Airavata.cpp    |  3498 +-
 .../src/main/resources/lib/airavata/Airavata.h  |   378 +-
 .../lib/airavata/Airavata_server.skeleton.cpp   |    18 +-
 .../resources/lib/airavata/airavata_api_types.h |     2 +-
 .../lib/airavata/airavata_data_models_types.h   |     2 +-
 .../airavata/application_io_models_types.cpp    |    44 +
 .../lib/airavata/application_io_models_types.h  |    24 +-
 .../replica_catalog_models_constants.cpp        |     2 +-
 .../airavata/replica_catalog_models_constants.h |     2 +-
 .../airavata/replica_catalog_models_types.cpp   |   434 +-
 .../lib/airavata/replica_catalog_models_types.h |   143 +-
 .../resources/lib/Airavata/API/Airavata.php     | 11205 ++---
 .../lib/Airavata/Model/Application/Io/Types.php |    46 +
 .../lib/Airavata/Model/Data/Replica/Types.php   |   803 +
 .../lib/apache/airavata/api/Airavata-remote     |    14 +
 .../lib/apache/airavata/api/Airavata.py         |   594 +-
 .../resources/lib/apache/airavata/api/ttypes.py |     2 +-
 .../airavata/model/application/io/ttypes.py     |    30 +-
 .../airavata/model/data/replica/__init__.py     |     1 +
 .../airavata/model/data/replica/constants.py    |    11 +
 .../airavata/model/data/replica/ttypes.py       |   511 +
 .../lib/apache/airavata/model/ttypes.py         |     2 +-
 .../client/samples/DataCatalogSample.java       |    73 -
 .../client/samples/ReplicaCatalogSample.java    |    72 +
 .../apache/airavata/model/ComponentStatus.java  |     2 +-
 .../org/apache/airavata/model/EdgeModel.java    |     2 +-
 .../org/apache/airavata/model/NodeModel.java    |     2 +-
 .../org/apache/airavata/model/PortModel.java    |     2 +-
 .../apache/airavata/model/WorkflowModel.java    |     2 +-
 .../apache/airavata/model/WorkflowStatus.java   |     2 +-
 .../ApplicationDeploymentDescription.java       |     2 +-
 .../appdeployment/ApplicationModule.java        |     2 +-
 .../appcatalog/appdeployment/CommandObject.java |     2 +-
 .../appcatalog/appdeployment/SetEnvPaths.java   |     2 +-
 .../ApplicationInterfaceDescription.java        |     2 +-
 .../appcatalog/computeresource/BatchQueue.java  |     2 +-
 .../computeresource/CloudJobSubmission.java     |     2 +-
 .../ComputeResourceDescription.java             |     2 +-
 .../computeresource/GlobusJobSubmission.java    |     2 +-
 .../computeresource/JobSubmissionInterface.java |     2 +-
 .../computeresource/LOCALSubmission.java        |     2 +-
 .../computeresource/ResourceJobManager.java     |     2 +-
 .../computeresource/SSHJobSubmission.java       |     2 +-
 .../computeresource/UnicoreJobSubmission.java   |     2 +-
 .../ComputeResourcePreference.java              |     2 +-
 .../gatewayprofile/GatewayResourceProfile.java  |     2 +-
 .../gatewayprofile/StoragePreference.java       |     2 +-
 .../StorageResourceDescription.java             |     2 +-
 .../application/io/InputDataObjectType.java     |   116 +-
 .../application/io/OutputDataObjectType.java    |   116 +-
 .../airavata/model/commons/ErrorModel.java      |     2 +-
 .../model/commons/ValidationResults.java        |     2 +-
 .../airavata/model/commons/ValidatorResult.java |     2 +-
 .../data/movement/DataMovementInterface.java    |     2 +-
 .../data/movement/GridFTPDataMovement.java      |     2 +-
 .../model/data/movement/LOCALDataMovement.java  |     2 +-
 .../model/data/movement/SCPDataMovement.java    |     2 +-
 .../data/movement/UnicoreDataMovement.java      |     2 +-
 .../model/data/product/DataProductModel.java    |  1943 -
 .../model/data/product/DataProductType.java     |    65 -
 .../data/product/DataReplicaLocationModel.java  |  1635 -
 .../data/product/ReplicaLocationCategory.java   |    68 -
 .../data/product/ReplicaPersistentType.java     |    62 -
 .../model/data/replica/DataProductModel.java    |  1677 +
 .../model/data/replica/DataProductType.java     |    62 +
 .../data/replica/DataReplicaLocationModel.java  |  1635 +
 .../data/replica/ReplicaLocationCategory.java   |    68 +
 .../data/replica/ReplicaPersistentType.java     |    62 +
 .../model/error/AiravataClientException.java    |     2 +-
 .../model/error/AiravataSystemException.java    |     2 +-
 .../model/error/AuthenticationException.java    |     2 +-
 .../model/error/AuthorizationException.java     |     2 +-
 .../error/ExperimentNotFoundException.java      |     2 +-
 .../model/error/InvalidRequestException.java    |     2 +-
 .../model/error/LaunchValidationException.java  |     2 +-
 .../model/error/ProjectNotFoundException.java   |     2 +-
 .../airavata/model/error/TimedOutException.java |     2 +-
 .../airavata/model/error/ValidationResults.java |     2 +-
 .../airavata/model/error/ValidatorResult.java   |     2 +-
 .../model/experiment/ExperimentModel.java       |     2 +-
 .../model/experiment/ExperimentStatistics.java  |     2 +-
 .../experiment/ExperimentSummaryModel.java      |     2 +-
 .../experiment/UserConfigurationDataModel.java  |     2 +-
 .../org/apache/airavata/model/job/JobModel.java |     2 +-
 .../event/ExperimentStatusChangeEvent.java      |     2 +-
 .../model/messaging/event/JobIdentifier.java    |     2 +-
 .../messaging/event/JobStatusChangeEvent.java   |     2 +-
 .../event/JobStatusChangeRequestEvent.java      |     2 +-
 .../airavata/model/messaging/event/Message.java |     2 +-
 .../messaging/event/ProcessIdentifier.java      |     2 +-
 .../event/ProcessStatusChangeEvent.java         |     2 +-
 .../event/ProcessStatusChangeRequestEvent.java  |     2 +-
 .../messaging/event/ProcessSubmitEvent.java     |     2 +-
 .../messaging/event/ProcessTerminateEvent.java  |     2 +-
 .../model/messaging/event/TaskIdentifier.java   |     2 +-
 .../messaging/event/TaskOutputChangeEvent.java  |     2 +-
 .../messaging/event/TaskStatusChangeEvent.java  |     2 +-
 .../event/TaskStatusChangeRequestEvent.java     |     2 +-
 .../airavata/model/process/ProcessModel.java    |     2 +-
 .../ComputationalResourceSchedulingModel.java   |     2 +-
 .../airavata/model/security/AuthzToken.java     |     2 +-
 .../airavata/model/status/ExperimentStatus.java |     2 +-
 .../apache/airavata/model/status/JobStatus.java |     2 +-
 .../airavata/model/status/ProcessStatus.java    |     2 +-
 .../airavata/model/status/TaskStatus.java       |     2 +-
 .../model/task/DataStagingTaskModel.java        |     2 +-
 .../model/task/EnvironmentSetupTaskModel.java   |     2 +-
 .../model/task/JobSubmissionTaskModel.java      |     2 +-
 .../airavata/model/task/MonitorTaskModel.java   |     2 +-
 .../apache/airavata/model/task/TaskModel.java   |     2 +-
 .../airavata/model/workspace/Gateway.java       |     2 +-
 .../apache/airavata/model/workspace/Group.java  |     2 +-
 .../airavata/model/workspace/Project.java       |     2 +-
 .../apache/airavata/model/workspace/User.java   |     2 +-
 .../main/resources/airavata-server.properties   |    14 +-
 .../test/resources/airavata-server.properties   |    16 +-
 .../apache/airavata/gfac/core/GFacUtils.java    |    19 +-
 .../server/OrchestratorServerHandler.java       |    12 +-
 .../core/data/catalog/impl/DataCatalogImpl.java |   355 -
 .../core/data/catalog/model/Configuration.java  |    55 -
 .../core/data/catalog/model/DataProduct.java    |   187 -
 .../data/catalog/model/DataProductMetaData.java |    77 -
 .../catalog/model/DataProductMetaData_PK.java   |    59 -
 .../data/catalog/model/DataReplicaLocation.java |   169 -
 .../data/catalog/model/DataReplicaMetaData.java |    77 -
 .../catalog/model/DataReplicaMetaData_PK.java   |    59 -
 .../catalog/utils/DataCatalogConstants.java     |    49 -
 .../data/catalog/utils/DataCatalogJPAUtils.java |    82 -
 .../utils/DataCatalogQueryGenerator.java        |   111 -
 .../utils/ThriftDataModelConversion.java        |   215 -
 .../catalog/impl/ExperimentRegistry.java        |     9 +-
 .../catalog/impl/RegistryFactory.java           |    10 +-
 .../catalog/model/ExperimentInput.java          |    10 +
 .../catalog/model/ExperimentOutput.java         |    11 +
 .../experiment/catalog/model/ProcessInput.java  |    11 +
 .../experiment/catalog/model/ProcessOutput.java |    11 +
 .../resources/ExperimentInputResource.java      |    10 +
 .../resources/ExperimentOutputResource.java     |    10 +
 .../catalog/resources/ProcessInputResource.java |    10 +
 .../resources/ProcessOutputResource.java        |    10 +
 .../utils/ThriftDataModelConversion.java        |     4 +
 .../registry/core/impl/RegistryImpl.java        |     6 +-
 .../catalog/impl/ReplicaCatalogImpl.java        |   366 +
 .../replica/catalog/model/Configuration.java    |    55 +
 .../core/replica/catalog/model/DataProduct.java |   177 +
 .../catalog/model/DataProductMetaData.java      |    77 +
 .../catalog/model/DataProductMetaData_PK.java   |    59 +
 .../catalog/model/DataReplicaLocation.java      |   169 +
 .../catalog/model/DataReplicaMetaData.java      |    77 +
 .../catalog/model/DataReplicaMetaData_PK.java   |    59 +
 .../catalog/utils/ReplicaCatalogConstants.java  |    49 +
 .../catalog/utils/ReplicaCatalogJPAUtils.java   |    82 +
 .../utils/ReplicaCatalogQueryGenerator.java     |   111 +
 .../utils/ThriftDataModelConversion.java        |   203 +
 .../src/main/resources/META-INF/persistence.xml |    12 +-
 .../src/main/resources/datacatalog-derby.sql    |    78 -
 .../src/main/resources/datacatalog-mysql.sql    |    77 -
 .../src/main/resources/expcatalog-derby.sql     |     4 +
 .../src/main/resources/expcatalog-mysql.sql     |     4 +
 .../src/main/resources/replicacatalog-derby.sql |    77 +
 .../src/main/resources/replicacatalog-mysql.sql |    76 +
 .../airavata/data/catalog/DataCatalogTest.java  |   100 -
 .../airavata/data/catalog/util/Initialize.java  |   315 -
 .../replica/catalog/ReplicaCatalogTest.java     |    99 +
 .../replica/catalog/util/Initialize.java        |   315 +
 .../airavata/registry/cpi/DataCatalog.java      |    50 -
 .../registry/cpi/DataCatalogException.java      |    35 -
 .../apache/airavata/registry/cpi/Registry.java  |     2 +-
 .../airavata/registry/cpi/ReplicaCatalog.java   |    54 +
 .../registry/cpi/ReplicaCatalogException.java   |    35 +
 .../airavata-apis/airavata_api.thrift           |    21 +-
 .../data-models/airavata_data_models.thrift     |     2 +-
 .../application_io_models.thrift                |     6 +-
 .../data_catalog_models.thrift                  |    73 -
 .../replica_catalog_models.thrift               |    70 +
 179 files changed, 39224 insertions(+), 32067 deletions(-)
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