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From chath...@apache.org
Subject [11/11] airavata git commit: Merge branch 'develop'
Date Thu, 18 Feb 2016 15:47:10 GMT
Merge branch 'develop'


Project: http://git-wip-us.apache.org/repos/asf/airavata/repo
Commit: http://git-wip-us.apache.org/repos/asf/airavata/commit/ace07827
Tree: http://git-wip-us.apache.org/repos/asf/airavata/tree/ace07827
Diff: http://git-wip-us.apache.org/repos/asf/airavata/diff/ace07827

Branch: refs/heads/master
Commit: ace07827dec6bd3202de277274613197571c0f50
Parents: 685b3c2 fa6b4d8
Author: Chathuri Wimalasena <chathuri@apache.org>
Authored: Thu Feb 18 10:49:10 2016 -0500
Committer: Chathuri Wimalasena <chathuri@apache.org>
Committed: Thu Feb 18 10:49:10 2016 -0500

----------------------------------------------------------------------
 .../server/handler/AiravataServerHandler.java   |  18 +-
 .../java/org/apache/airavata/api/Airavata.java  | 268 ++++++++++++++-----
 .../main/resources/lib/airavata/Airavata.cpp    | 193 +++++++------
 .../src/main/resources/lib/airavata/Airavata.h  |  37 +--
 .../lib/airavata/Airavata_server.skeleton.cpp   |   5 +-
 .../resources/lib/Airavata/API/Airavata.php     |  53 +++-
 .../lib/apache/airavata/api/Airavata-remote     |   8 +-
 .../lib/apache/airavata/api/Airavata.py         |  56 ++--
 .../apache/airavata/model/ComponentStatus.java  |   2 +-
 .../org/apache/airavata/model/EdgeModel.java    |   2 +-
 .../org/apache/airavata/model/NodeModel.java    |   2 +-
 .../org/apache/airavata/model/PortModel.java    |   2 +-
 .../apache/airavata/model/WorkflowModel.java    |   2 +-
 .../apache/airavata/model/WorkflowStatus.java   |   2 +-
 .../ApplicationDeploymentDescription.java       |   2 +-
 .../appdeployment/ApplicationModule.java        |   2 +-
 .../appcatalog/appdeployment/CommandObject.java |   2 +-
 .../appcatalog/appdeployment/SetEnvPaths.java   |   2 +-
 .../ApplicationInterfaceDescription.java        |   2 +-
 .../appcatalog/computeresource/BatchQueue.java  |   2 +-
 .../computeresource/CloudJobSubmission.java     |   2 +-
 .../ComputeResourceDescription.java             |   2 +-
 .../computeresource/GlobusJobSubmission.java    |   2 +-
 .../computeresource/JobSubmissionInterface.java |   2 +-
 .../computeresource/LOCALSubmission.java        |   2 +-
 .../computeresource/ResourceJobManager.java     |   2 +-
 .../computeresource/SSHJobSubmission.java       |   2 +-
 .../computeresource/UnicoreJobSubmission.java   |   2 +-
 .../ComputeResourcePreference.java              |   2 +-
 .../gatewayprofile/GatewayResourceProfile.java  |   2 +-
 .../gatewayprofile/StoragePreference.java       |   2 +-
 .../StorageResourceDescription.java             |   2 +-
 .../application/io/InputDataObjectType.java     |   2 +-
 .../application/io/OutputDataObjectType.java    |   2 +-
 .../airavata/model/commons/ErrorModel.java      |   2 +-
 .../model/commons/ValidationResults.java        |   2 +-
 .../airavata/model/commons/ValidatorResult.java |   2 +-
 .../data/movement/DataMovementInterface.java    |   2 +-
 .../data/movement/GridFTPDataMovement.java      |   2 +-
 .../model/data/movement/LOCALDataMovement.java  |   2 +-
 .../model/data/movement/SCPDataMovement.java    |   2 +-
 .../data/movement/UnicoreDataMovement.java      |   2 +-
 .../data/resource/DataReplicaLocationModel.java |   2 +-
 .../model/data/resource/DataResourceModel.java  |   2 +-
 .../model/error/AiravataClientException.java    |   2 +-
 .../model/error/AiravataSystemException.java    |   2 +-
 .../model/error/AuthenticationException.java    |   2 +-
 .../model/error/AuthorizationException.java     |   2 +-
 .../error/ExperimentNotFoundException.java      |   2 +-
 .../model/error/InvalidRequestException.java    |   2 +-
 .../model/error/LaunchValidationException.java  |   2 +-
 .../model/error/ProjectNotFoundException.java   |   2 +-
 .../airavata/model/error/TimedOutException.java |   2 +-
 .../airavata/model/error/ValidationResults.java |   2 +-
 .../airavata/model/error/ValidatorResult.java   |   2 +-
 .../model/experiment/ExperimentModel.java       |   2 +-
 .../model/experiment/ExperimentStatistics.java  |   2 +-
 .../experiment/ExperimentSummaryModel.java      |   2 +-
 .../experiment/UserConfigurationDataModel.java  |   2 +-
 .../org/apache/airavata/model/job/JobModel.java |   2 +-
 .../event/ExperimentStatusChangeEvent.java      |   2 +-
 .../model/messaging/event/JobIdentifier.java    |   2 +-
 .../messaging/event/JobStatusChangeEvent.java   |   2 +-
 .../event/JobStatusChangeRequestEvent.java      |   2 +-
 .../airavata/model/messaging/event/Message.java |   2 +-
 .../messaging/event/ProcessIdentifier.java      |   2 +-
 .../event/ProcessStatusChangeEvent.java         |   2 +-
 .../event/ProcessStatusChangeRequestEvent.java  |   2 +-
 .../messaging/event/ProcessSubmitEvent.java     |   2 +-
 .../messaging/event/ProcessTerminateEvent.java  |   2 +-
 .../model/messaging/event/TaskIdentifier.java   |   2 +-
 .../messaging/event/TaskOutputChangeEvent.java  |   2 +-
 .../messaging/event/TaskStatusChangeEvent.java  |   2 +-
 .../event/TaskStatusChangeRequestEvent.java     |   2 +-
 .../airavata/model/process/ProcessModel.java    |   2 +-
 .../ComputationalResourceSchedulingModel.java   |   2 +-
 .../airavata/model/security/AuthzToken.java     |   2 +-
 .../airavata/model/status/ExperimentStatus.java |   2 +-
 .../apache/airavata/model/status/JobStatus.java |   2 +-
 .../airavata/model/status/ProcessStatus.java    |   2 +-
 .../airavata/model/status/TaskStatus.java       |   2 +-
 .../model/task/DataStagingTaskModel.java        |   2 +-
 .../model/task/EnvironmentSetupTaskModel.java   |   2 +-
 .../model/task/JobSubmissionTaskModel.java      |   2 +-
 .../airavata/model/task/MonitorTaskModel.java   |   2 +-
 .../apache/airavata/model/task/TaskModel.java   |   2 +-
 .../airavata/model/workspace/Gateway.java       |   2 +-
 .../apache/airavata/model/workspace/Group.java  |   2 +-
 .../airavata/model/workspace/Project.java       |   2 +-
 .../apache/airavata/model/workspace/User.java   |   2 +-
 .../server/src/main/resources/gfac-config.yaml  |   2 +-
 .../scripts/credential-store-mysql.sql          |  28 +-
 .../apache/airavata/gfac/core/GFacUtils.java    |   2 +-
 .../app/catalog/impl/StorageResourceImpl.java   |  14 +
 .../resources/StorageInterfaceResource.java     |   4 +-
 .../main/resources/workflowcatalog-mysql.sql    |   3 +-
 .../airavata/registry/cpi/StorageResource.java  |   2 +
 .../workflow/core/dag/nodes/InputNode.java      |   8 +-
 .../workflow/core/dag/nodes/InputNodeImpl.java  | 110 +++++++-
 .../workflow/core/dag/nodes/OutputNode.java     |   2 +-
 .../workflow/core/dag/nodes/OutputNodeImpl.java |  89 +++++-
 .../workflow/core/dag/port/InputPortIml.java    |  17 ++
 .../workflow/core/dag/port/OutPortImpl.java     |  17 ++
 .../airavata/workflow/core/dag/port/Port.java   |   7 +
 .../core/parser/JsonWorkflowParser.java         | 171 ++++++++++--
 .../src/test/resources/TestWorkflow.json        |  28 +-
 .../airavata-apis/airavata_api.thrift           |   5 +-
 107 files changed, 951 insertions(+), 360 deletions(-)
----------------------------------------------------------------------



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