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From chath...@apache.org
Subject [16/16] airavata git commit: merging master with branch
Date Wed, 24 Feb 2016 20:08:22 GMT
merging master with branch


Project: http://git-wip-us.apache.org/repos/asf/airavata/repo
Commit: http://git-wip-us.apache.org/repos/asf/airavata/commit/e6d68271
Tree: http://git-wip-us.apache.org/repos/asf/airavata/tree/e6d68271
Diff: http://git-wip-us.apache.org/repos/asf/airavata/diff/e6d68271

Branch: refs/heads/master
Commit: e6d6827114ce2497df512e26d99346e3f013ff49
Parents: 6718650 55f190c
Author: Chathuri Wimalasena <chathuri@apache.org>
Authored: Wed Feb 24 15:10:48 2016 -0500
Committer: Chathuri Wimalasena <chathuri@apache.org>
Committed: Wed Feb 24 15:10:48 2016 -0500

----------------------------------------------------------------------
 .../airavata/api/server/AiravataAPIServer.java  |  10 +-
 .../server/util/CredentialStoreInitUtil.java    | 156 +++++++++++++++++++
 .../java/org/apache/airavata/api/Airavata.java  |   2 +-
 .../gateway_resource_profile_model_types.cpp    |  22 +++
 .../gateway_resource_profile_model_types.h      |  12 +-
 .../Model/AppCatalog/GatewayProfile/Types.php   |  23 +++
 .../model/appcatalog/gatewayprofile/ttypes.py   |  15 +-
 .../apache/airavata/model/ComponentStatus.java  |   2 +-
 .../org/apache/airavata/model/EdgeModel.java    |   2 +-
 .../org/apache/airavata/model/NodeModel.java    |   2 +-
 .../org/apache/airavata/model/PortModel.java    |   2 +-
 .../apache/airavata/model/WorkflowModel.java    |   2 +-
 .../apache/airavata/model/WorkflowStatus.java   |   2 +-
 .../ApplicationDeploymentDescription.java       |   2 +-
 .../appdeployment/ApplicationModule.java        |   2 +-
 .../appcatalog/appdeployment/CommandObject.java |   2 +-
 .../appcatalog/appdeployment/SetEnvPaths.java   |   2 +-
 .../ApplicationInterfaceDescription.java        |   2 +-
 .../appcatalog/computeresource/BatchQueue.java  |   2 +-
 .../computeresource/CloudJobSubmission.java     |   2 +-
 .../ComputeResourceDescription.java             |   2 +-
 .../computeresource/GlobusJobSubmission.java    |   2 +-
 .../computeresource/JobSubmissionInterface.java |   2 +-
 .../computeresource/LOCALSubmission.java        |   2 +-
 .../computeresource/ResourceJobManager.java     |   2 +-
 .../computeresource/SSHJobSubmission.java       |   2 +-
 .../computeresource/UnicoreJobSubmission.java   |   2 +-
 .../ComputeResourcePreference.java              | 116 +++++++++++++-
 .../gatewayprofile/GatewayResourceProfile.java  | 116 +-------------
 .../gatewayprofile/StoragePreference.java       |   2 +-
 .../StorageResourceDescription.java             |   2 +-
 .../application/io/InputDataObjectType.java     |   2 +-
 .../application/io/OutputDataObjectType.java    |   2 +-
 .../airavata/model/commons/ErrorModel.java      |   2 +-
 .../model/commons/ValidationResults.java        |   2 +-
 .../airavata/model/commons/ValidatorResult.java |   2 +-
 .../data/movement/DataMovementInterface.java    |   2 +-
 .../data/movement/GridFTPDataMovement.java      |   2 +-
 .../model/data/movement/LOCALDataMovement.java  |   2 +-
 .../model/data/movement/SCPDataMovement.java    |   2 +-
 .../data/movement/UnicoreDataMovement.java      |   2 +-
 .../data/resource/DataReplicaLocationModel.java |   2 +-
 .../model/data/resource/DataResourceModel.java  |   2 +-
 .../model/error/AiravataClientException.java    |   2 +-
 .../model/error/AiravataSystemException.java    |   2 +-
 .../model/error/AuthenticationException.java    |   2 +-
 .../model/error/AuthorizationException.java     |   2 +-
 .../error/ExperimentNotFoundException.java      |   2 +-
 .../model/error/InvalidRequestException.java    |   2 +-
 .../model/error/LaunchValidationException.java  |   2 +-
 .../model/error/ProjectNotFoundException.java   |   2 +-
 .../airavata/model/error/TimedOutException.java |   2 +-
 .../airavata/model/error/ValidationResults.java |   2 +-
 .../airavata/model/error/ValidatorResult.java   |   2 +-
 .../model/experiment/ExperimentModel.java       |   2 +-
 .../model/experiment/ExperimentStatistics.java  |   2 +-
 .../experiment/ExperimentSummaryModel.java      |   2 +-
 .../experiment/UserConfigurationDataModel.java  |   2 +-
 .../org/apache/airavata/model/job/JobModel.java |   2 +-
 .../event/ExperimentStatusChangeEvent.java      |   2 +-
 .../model/messaging/event/JobIdentifier.java    |   2 +-
 .../messaging/event/JobStatusChangeEvent.java   |   2 +-
 .../event/JobStatusChangeRequestEvent.java      |   2 +-
 .../airavata/model/messaging/event/Message.java |   2 +-
 .../messaging/event/ProcessIdentifier.java      |   2 +-
 .../event/ProcessStatusChangeEvent.java         |   2 +-
 .../event/ProcessStatusChangeRequestEvent.java  |   2 +-
 .../messaging/event/ProcessSubmitEvent.java     |   2 +-
 .../messaging/event/ProcessTerminateEvent.java  |   2 +-
 .../model/messaging/event/TaskIdentifier.java   |   2 +-
 .../messaging/event/TaskOutputChangeEvent.java  |   2 +-
 .../messaging/event/TaskStatusChangeEvent.java  |   2 +-
 .../event/TaskStatusChangeRequestEvent.java     |   2 +-
 .../airavata/model/process/ProcessModel.java    |   2 +-
 .../ComputationalResourceSchedulingModel.java   |   2 +-
 .../airavata/model/security/AuthzToken.java     |   2 +-
 .../airavata/model/status/ExperimentStatus.java |   2 +-
 .../apache/airavata/model/status/JobStatus.java |   2 +-
 .../airavata/model/status/ProcessStatus.java    |   2 +-
 .../airavata/model/status/TaskStatus.java       |   2 +-
 .../model/task/DataStagingTaskModel.java        |   2 +-
 .../model/task/EnvironmentSetupTaskModel.java   |   2 +-
 .../model/task/JobSubmissionTaskModel.java      |   2 +-
 .../airavata/model/task/MonitorTaskModel.java   |   2 +-
 .../apache/airavata/model/task/TaskModel.java   |   2 +-
 .../airavata/model/workspace/Gateway.java       |   2 +-
 .../apache/airavata/model/workspace/Group.java  |   2 +-
 .../airavata/model/workspace/Project.java       |   2 +-
 .../apache/airavata/model/workspace/User.java   |   2 +-
 .../common/utils/ApplicationSettings.java       |  16 --
 .../airavata/common/utils/ServerSettings.java   |   3 +-
 .../main/resources/airavata-server.properties   |  16 +-
 .../scripts/credential-store-h2.sql             |  42 -----
 .../scripts/credential-store-mysql.sql          |  38 -----
 .../store/server/CredentialStoreServer.java     |  87 +++++------
 .../apache/airavata/gfac/core/GFacUtils.java    |   2 +
 .../impl/task/DefaultJobSubmissionTask.java     |  31 +++-
 .../catalog/impl/GwyResourceProfileImpl.java    |   4 +-
 .../core/app/catalog/model/ComputeResource.java |  33 ++++
 .../model/ComputeResourcePreference.java        |  10 ++
 .../ComputeHostPreferenceResource.java          |  11 ++
 .../resources/ComputeResourceResource.java      |  30 ++++
 .../app/catalog/util/AppCatalogJPAUtils.java    |   4 +
 .../util/AppCatalogThriftConversion.java        |   7 +
 .../src/main/resources/appcatalog-derby.sql     |   4 +
 .../src/main/resources/appcatalog-mysql.sql     |   4 +
 .../src/main/resources/credstore-derby.sql      |  39 +++++
 .../src/main/resources/credstore-mysql.sql      |  39 +++++
 .../src/main/resources/expcatalog-derby.sql     |  21 +--
 .../src/main/resources/expcatalog-mysql.sql     |  21 +--
 .../org/apache/airavata/server/ServerMain.java  |   4 +-
 .../airavata/workflow/core/WorkflowInfo.java    |  38 +++--
 .../workflow/core/dag/edge/DirectedEdge.java    |  12 +-
 .../workflow/core/dag/nodes/InputNodeImpl.java  |   6 +-
 .../workflow/core/dag/nodes/OutputNodeImpl.java |  12 +-
 .../core/parser/JsonWorkflowParser.java         |  31 +++-
 .../src/test/resources/TestWorkflow.json        |  16 +-
 .../gateway_resource_profile_model.thrift       |   6 +-
 118 files changed, 765 insertions(+), 454 deletions(-)
----------------------------------------------------------------------


http://git-wip-us.apache.org/repos/asf/airavata/blob/e6d68271/airavata-api/airavata-client-sdks/airavata-cpp-sdk/src/main/resources/lib/airavata/gateway_resource_profile_model_types.cpp
----------------------------------------------------------------------

http://git-wip-us.apache.org/repos/asf/airavata/blob/e6d68271/airavata-api/airavata-client-sdks/airavata-cpp-sdk/src/main/resources/lib/airavata/gateway_resource_profile_model_types.h
----------------------------------------------------------------------

http://git-wip-us.apache.org/repos/asf/airavata/blob/e6d68271/airavata-api/airavata-client-sdks/airavata-php-sdk/src/main/resources/lib/Airavata/Model/AppCatalog/GatewayProfile/Types.php
----------------------------------------------------------------------

http://git-wip-us.apache.org/repos/asf/airavata/blob/e6d68271/airavata-api/airavata-client-sdks/airavata-python-sdk/src/main/resources/lib/apache/airavata/model/appcatalog/gatewayprofile/ttypes.py
----------------------------------------------------------------------


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