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From shame...@apache.org
Subject [22/54] [abbrv] airavata git commit: Merge branch 'develop' of https://git-wip-us.apache.org/repos/asf/airavata into develop
Date Fri, 04 Dec 2015 21:01:47 GMT
Merge branch 'develop' of https://git-wip-us.apache.org/repos/asf/airavata into develop


Project: http://git-wip-us.apache.org/repos/asf/airavata/repo
Commit: http://git-wip-us.apache.org/repos/asf/airavata/commit/9e4dccff
Tree: http://git-wip-us.apache.org/repos/asf/airavata/tree/9e4dccff
Diff: http://git-wip-us.apache.org/repos/asf/airavata/diff/9e4dccff

Branch: refs/heads/master
Commit: 9e4dccffc79655c44d66cd82166c3b04bed13ff7
Parents: 9943dbf ca89eae
Author: Shameera Rathnayaka <shameerainfo@gmail.com>
Authored: Mon Nov 23 14:53:21 2015 -0500
Committer: Shameera Rathnayaka <shameerainfo@gmail.com>
Committed: Mon Nov 23 14:53:21 2015 -0500

----------------------------------------------------------------------
 .../server/handler/AiravataServerHandler.java   |   250 +-
 .../java/org/apache/airavata/api/Airavata.java  | 25818 +++++++++++------
 .../main/resources/lib/airavata/Airavata.cpp    |  9879 ++++---
 .../src/main/resources/lib/airavata/Airavata.h  |  2043 +-
 .../lib/airavata/Airavata_server.skeleton.cpp   |   185 +-
 .../resources/lib/airavata/airavata_api_types.h |     2 +
 .../lib/airavata/airavata_data_models_types.h   |     1 +
 .../airavata/compute_resource_model_types.cpp   |  1288 +-
 .../lib/airavata/compute_resource_model_types.h |   311 +-
 .../airavata/data_movement_models_constants.cpp |    34 +
 .../airavata/data_movement_models_constants.h   |    41 +
 .../lib/airavata/data_movement_models_types.cpp |   763 +
 .../lib/airavata/data_movement_models_types.h   |   327 +
 .../lib/airavata/experiment_model_types.cpp     |   406 +-
 .../lib/airavata/experiment_model_types.h       |    31 +-
 .../gateway_resource_profile_model_types.cpp    |    88 +-
 .../gateway_resource_profile_model_types.h      |    55 +-
 .../lib/airavata/process_model_types.cpp        |    26 +-
 .../lib/airavata/process_model_types.h          |    16 +-
 .../storage_resource_model_constants.cpp        |    34 +
 .../airavata/storage_resource_model_constants.h |    41 +
 .../airavata/storage_resource_model_types.cpp   |   235 +
 .../lib/airavata/storage_resource_model_types.h |   116 +
 .../resources/lib/airavata/task_model_types.cpp |   206 +-
 .../resources/lib/airavata/task_model_types.h   |    22 +-
 .../resources/lib/Airavata/API/Airavata.php     |  6474 +++--
 .../Model/AppCatalog/ComputeResource/Types.php  |   943 +-
 .../Model/AppCatalog/GatewayProfile/Types.php   |    50 +-
 .../Model/AppCatalog/StorageResource/Types.php  |   232 +
 .../lib/Airavata/Model/Data/Movement/Types.php  |   742 +
 .../lib/Airavata/Model/Experiment/Types.php     |   210 +-
 .../lib/Airavata/Model/Process/Types.php        |    23 +
 .../resources/lib/Airavata/Model/Task/Types.php |    51 +
 .../src/main/resources/lib/Types.php            |    20 +
 .../lib/apache/airavata/api/Airavata-remote     |   114 +-
 .../lib/apache/airavata/api/Airavata.py         |  4418 ++-
 .../resources/lib/apache/airavata/api/ttypes.py |     2 +
 .../model/appcatalog/computeresource/ttypes.py  |   700 +-
 .../model/appcatalog/gatewayprofile/ttypes.py   |    51 +-
 .../appcatalog/storageresource/__init__.py      |     1 +
 .../appcatalog/storageresource/constants.py     |    11 +
 .../model/appcatalog/storageresource/ttypes.py  |   167 +
 .../lib/apache/airavata/model/data/__init__.py  |     0
 .../airavata/model/data/movement/__init__.py    |     1 +
 .../airavata/model/data/movement/constants.py   |    11 +
 .../airavata/model/data/movement/ttypes.py      |   625 +
 .../apache/airavata/model/experiment/ttypes.py  |   140 +-
 .../lib/apache/airavata/model/process/ttypes.py |    15 +-
 .../lib/apache/airavata/model/task/ttypes.py    |    26 +-
 .../lib/apache/airavata/model/ttypes.py         |     1 +
 .../client/samples/CreateLaunchBES.java         |     3 +-
 .../client/samples/CreateLaunchExperiment.java  |     1 +
 .../client/samples/RegisterSampleData.java      |     4 +-
 .../tools/RegisterOGCEUS3Application.java       |     7 +-
 .../tools/RegisterSampleApplications.java       |     6 +-
 .../tools/RegisterSampleApplicationsUtils.java  |     2 +
 .../client/tools/RegisterUS3Application.java    |     7 +-
 .../org/apache/airavata/model/Workflow.java     |     2 +-
 .../ApplicationDeploymentDescription.java       |     2 +-
 .../appdeployment/ApplicationModule.java        |     2 +-
 .../appcatalog/appdeployment/CommandObject.java |     2 +-
 .../appcatalog/appdeployment/SetEnvPaths.java   |     2 +-
 .../ApplicationInterfaceDescription.java        |     2 +-
 .../appcatalog/computeresource/BatchQueue.java  |     2 +-
 .../computeresource/CloudJobSubmission.java     |    24 +-
 .../ComputeResourceDescription.java             |   240 +-
 .../computeresource/DataMovementInterface.java  |   630 -
 .../computeresource/DataMovementProtocol.java   |    87 -
 .../computeresource/GlobusJobSubmission.java    |    56 +-
 .../computeresource/GridFTPDataMovement.java    |   681 -
 .../computeresource/JobSubmissionInterface.java |     2 +-
 .../computeresource/LOCALDataMovement.java      |   418 -
 .../computeresource/LOCALSubmission.java        |    24 +-
 .../computeresource/ResourceJobManager.java     |     2 +-
 .../computeresource/SCPDataMovement.java        |   746 -
 .../computeresource/SSHJobSubmission.java       |    56 +-
 .../computeresource/SecurityProtocol.java       |    88 -
 .../computeresource/UnicoreDataMovement.java    |   629 -
 .../computeresource/UnicoreJobSubmission.java   |    24 +-
 .../ComputeResourcePreference.java              |    22 +-
 .../gatewayprofile/DataStoragePreference.java   |   728 -
 .../gatewayprofile/GatewayResourceProfile.java  |   154 +-
 .../gatewayprofile/StoragePreference.java       |   728 +
 .../StorageResourceDescription.java             |   900 +
 .../application/io/InputDataObjectType.java     |     2 +-
 .../application/io/OutputDataObjectType.java    |     2 +-
 .../airavata/model/commons/ErrorModel.java      |     2 +-
 .../model/commons/ValidationResults.java        |     2 +-
 .../airavata/model/commons/ValidatorResult.java |     2 +-
 .../airavata/model/data/movement/DMType.java    |    62 +
 .../data/movement/DataMovementInterface.java    |   630 +
 .../data/movement/DataMovementProtocol.java     |    87 +
 .../data/movement/GridFTPDataMovement.java      |   681 +
 .../model/data/movement/LOCALDataMovement.java  |   418 +
 .../model/data/movement/SCPDataMovement.java    |   746 +
 .../model/data/movement/SecurityProtocol.java   |    88 +
 .../data/movement/UnicoreDataMovement.java      |   629 +
 .../model/error/AiravataClientException.java    |     2 +-
 .../model/error/AiravataSystemException.java    |     2 +-
 .../model/error/AuthenticationException.java    |     2 +-
 .../model/error/AuthorizationException.java     |     2 +-
 .../error/ExperimentNotFoundException.java      |     2 +-
 .../model/error/InvalidRequestException.java    |     2 +-
 .../model/error/LaunchValidationException.java  |     2 +-
 .../model/error/ProjectNotFoundException.java   |     2 +-
 .../airavata/model/error/TimedOutException.java |     2 +-
 .../airavata/model/error/ValidationResults.java |     2 +-
 .../airavata/model/error/ValidatorResult.java   |     2 +-
 .../model/experiment/ExperimentModel.java       |   256 +-
 .../model/experiment/ExperimentStatistics.java  |   218 +-
 .../experiment/ExperimentSummaryModel.java      |     2 +-
 .../experiment/UserConfigurationDataModel.java  |   116 +-
 .../org/apache/airavata/model/job/JobModel.java |     2 +-
 .../event/ExperimentStatusChangeEvent.java      |     2 +-
 .../model/messaging/event/JobIdentifier.java    |     2 +-
 .../messaging/event/JobStatusChangeEvent.java   |     2 +-
 .../event/JobStatusChangeRequestEvent.java      |     2 +-
 .../airavata/model/messaging/event/Message.java |     2 +-
 .../messaging/event/ProcessIdentifier.java      |     2 +-
 .../event/ProcessStatusChangeEvent.java         |     2 +-
 .../event/ProcessStatusChangeRequestEvent.java  |     2 +-
 .../messaging/event/ProcessSubmitEvent.java     |     2 +-
 .../messaging/event/ProcessTerminateEvent.java  |     2 +-
 .../model/messaging/event/TaskIdentifier.java   |     2 +-
 .../messaging/event/TaskOutputChangeEvent.java  |     2 +-
 .../messaging/event/TaskStatusChangeEvent.java  |     2 +-
 .../event/TaskStatusChangeRequestEvent.java     |     2 +-
 .../airavata/model/process/ProcessModel.java    |   116 +-
 .../ComputationalResourceSchedulingModel.java   |     2 +-
 .../airavata/model/security/AuthzToken.java     |     2 +-
 .../airavata/model/status/ExperimentStatus.java |     2 +-
 .../apache/airavata/model/status/JobStatus.java |     2 +-
 .../airavata/model/status/ProcessStatus.java    |     2 +-
 .../airavata/model/status/TaskStatus.java       |     2 +-
 .../model/task/DataStagingTaskModel.java        |     2 +-
 .../model/task/EnvironmentSetupTaskModel.java   |    24 +-
 .../model/task/JobSubmissionTaskModel.java      |     2 +-
 .../airavata/model/task/MonitorTaskModel.java   |     2 +-
 .../apache/airavata/model/task/TaskModel.java   |   170 +-
 .../airavata/model/workspace/Gateway.java       |     2 +-
 .../apache/airavata/model/workspace/Group.java  |     2 +-
 .../airavata/model/workspace/Project.java       |     2 +-
 .../apache/airavata/model/workspace/User.java   |     2 +-
 .../core/config/DataTransferTaskConfig.java     |     2 +-
 .../gfac/core/config/GFacYamlConfigruation.java |     2 +-
 .../gfac/core/context/ProcessContext.java       |    22 +-
 .../org/apache/airavata/gfac/impl/Factory.java  |     1 +
 .../airavata/gfac/impl/GFacEngineImpl.java      |     2 +
 .../integration/tools/DocumentCreatorNew.java   |     3 -
 .../integration/tools/DocumentCreatorUtils.java |     2 -
 .../core/utils/OrchestratorUtils.java           |    14 +-
 .../cpi/impl/SimpleOrchestratorImpl.java        |     1 +
 .../core/app/catalog/impl/AppCatalogImpl.java   |     4 +
 .../app/catalog/impl/ComputeResourceImpl.java   |    29 +-
 .../catalog/impl/GwyResourceProfileImpl.java    |    44 +-
 .../app/catalog/impl/StorageResourceImpl.java   |   248 +
 .../catalog/model/DataStoragePreference.java    |    96 -
 .../catalog/model/DataStoragePreferencePK.java  |    64 -
 .../app/catalog/model/DataStorageResource.java  |   113 +
 .../app/catalog/model/StorageInterface.java     |   102 +
 .../app/catalog/model/StorageInterface_PK.java  |    62 +
 .../app/catalog/model/StoragePreference.java    |    95 +
 .../app/catalog/model/StoragePreferencePK.java  |    64 +
 .../core/app/catalog/model/StorageResource.java |   110 +
 .../resources/AppCatAbstractResource.java       |    29 +-
 .../DataStoragePreferenceResource.java          |   323 -
 .../resources/StorageInterfaceResource.java     |   326 +
 .../resources/StoragePreferenceResource.java    |   322 +
 .../resources/StorageResourceResource.java      |   350 +
 .../app/catalog/util/AppCatalogJPAUtils.java    |    48 +-
 .../catalog/util/AppCatalogResourceType.java    |     4 +-
 .../util/AppCatalogThriftConversion.java        |    55 +-
 .../catalog/model/UserConfigurationData.java    |    10 +
 .../UserConfigurationDataResource.java          |     9 +
 .../src/main/resources/META-INF/persistence.xml |     4 +-
 .../src/main/resources/appcatalog-derby.sql     |    28 +-
 .../src/main/resources/appcatalog-mysql.sql     |    27 +-
 ...puteAppCatalogExperimentCatResourceTest.java |     1 +
 .../app/catalog/GatewayProfileTest.java         |     2 +-
 .../airavata/registry/cpi/AppCatalog.java       |     6 +
 .../airavata/registry/cpi/ComputeResource.java  |     5 +-
 .../registry/cpi/GwyResourceProfile.java        |     6 +-
 .../airavata/registry/cpi/StorageResource.java  |    90 +
 .../ComputeResourceRegister.java                |     6 +-
 .../airavata-api/airavata_api.thrift            |   209 +-
 .../airavata-api/airavata_data_models.thrift    |     1 +
 .../airavata-api/compute_resource_model.thrift  |   131 +-
 .../airavata-api/data_movement_models.thrift    |   154 +
 .../airavata-api/experiment_model.thrift        |     7 +-
 .../gateway_resource_profile_model.thrift       |     9 +-
 .../airavata-api/process_model.thrift           |     3 +-
 .../airavata-api/storage_resource_model.thrift  |     4 +-
 .../airavata-api/task_model.thrift              |     7 +-
 .../generate-thrift-stubs.sh                    |     2 +
 194 files changed, 46892 insertions(+), 24226 deletions(-)
----------------------------------------------------------------------


http://git-wip-us.apache.org/repos/asf/airavata/blob/9e4dccff/modules/gfac/gfac-impl/src/main/java/org/apache/airavata/gfac/impl/GFacEngineImpl.java
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