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From sma...@apache.org
Subject [07/13] airavata git commit: Cleaning up distribution - AIRAVATA-1794
Date Mon, 03 Aug 2015 03:41:29 GMT
http://git-wip-us.apache.org/repos/asf/airavata/blob/51791dff/modules/distribution/gfac-server/src/main/resources/NOTICE
----------------------------------------------------------------------
diff --git a/modules/distribution/gfac-server/src/main/resources/NOTICE b/modules/distribution/gfac-server/src/main/resources/NOTICE
deleted file mode 100644
index fa7cba5..0000000
--- a/modules/distribution/gfac-server/src/main/resources/NOTICE
+++ /dev/null
@@ -1,163 +0,0 @@
-Apache Airavata
-Copyright 2014 The Apache Software Foundation
-
-This product includes software developed at
-The Apache Software Foundation (http://www.apache.org/).
-
-===============================================================================
-Apache Xerces Java Notice:
-
-   Portions of this software were originally based on the following:
-     - software copyright (c) 1999, IBM Corporation., http://www.ibm.com.
-     - software copyright (c) 1999, Sun Microsystems., http://www.sun.com.
-     - voluntary contributions made by Paul Eng on behalf of the
-       Apache Software Foundation that were originally developed at iClick, Inc.,
-       software copyright (c) 1999.
-
-================================================================================
-Apache XmlBeans Notice: 
-
-   Portions of this software were originally based on the following:
-     - software copyright (c) 2000-2003, BEA Systems, <http://www.bea.com/>.
-
-   Aside from contributions to the Apache XMLBeans project, this
-   software also includes:
-
-    - one or more source files from the Apache Xerces-J and Apache Axis
-      products, Copyright (c) 1999-2003 Apache Software Foundation
-
-    - W3C XML Schema documents Copyright 2001-2003 (c) World Wide Web
-      Consortium (Massachusetts Institute of Technology, European Research
-      Consortium for Informatics and Mathematics, Keio University)
-
-    - resolver.jar from Apache Xml Commons project,
-      Copyright (c) 2001-2003 Apache Software Foundation
-
-    - Piccolo XML Parser for Java from http://piccolo.sourceforge.net/,
-      Copyright 2002 Yuval Oren under the terms of the Apache Software License 2.0
-
-    - JSR-173 Streaming API for XML from http://sourceforge.net/projects/xmlpullparser/,
-      Copyright 2005 BEA under the terms of the Apache Software License 2.0
-      
-=========================================================================================
-Apache Axis2 Notice: (axis2-*, mex-1.5.1-impl)
-
-Portions Copyright 2006 International Business Machines Corp.
-Portions Copyright 2005-2007 WSO2, Inc.
-
-This product also includes schemas and specification developed by:
-- the W3C consortium (http://www.w3c.org)
-
-This product also includes WS-* schemas developed by International
-Business Machines Corporation, Microsoft Corporation, BEA Systems, 
-TIBCO Software, SAP AG, Sonic Software, and VeriSign
-
-This product also includes a WSDL developed by salesforce.com
-- Copyright 1999-2006 salesforce.com, inc.
-Portions of the included xmlbeans library were originally based on the following:
-- software copyright (c) 2000-2003, BEA Systems, <http://www.bea.com/>.
-
-====================================================================================
-Apache Derby Notice:
-
-Portions of Derby were originally developed by
-International Business Machines Corporation and are
-licensed to the Apache Software Foundation under the
-"Software Grant and Corporate Contribution License Agreement",
-informally known as the "Derby CLA".
-The following copyright notice(s) were affixed to portions of the code
-with which this file is now or was at one time distributed
-and are placed here unaltered.
-
-(C) Copyright 1997,2004 International Business Machines Corporation.  All rights reserved.
-
-(C) Copyright IBM Corp. 2003. 
-
-=======================
-
-The portion of the functionTests under 'nist' was originally 
-developed by the National Institute of Standards and Technology (NIST), 
-an agency of the United States Department of Commerce, and adapted by
-International Business Machines Corporation in accordance with the NIST
-Software Acknowledgment and Redistribution document at
-http://www.itl.nist.gov/div897/ctg/sql_form.htm
-
-========================
-
-The JDBC apis for small devices and JDBC3 (under java/stubs/jsr169 and
-java/stubs/jdbc3) were produced by trimming sources supplied by the
-Apache Harmony project. In addition, the Harmony SerialBlob and
-SerialClob implementations are used. The following notice covers the Harmony sources:
-
-Portions of Harmony were originally developed by
-Intel Corporation and are licensed to the Apache Software
-Foundation under the "Software Grant and Corporate Contribution
-License Agreement", informally known as the "Intel Harmony CLA".
-
-=============================================================================
-Apache Woden Notice:
-
-   This product also includes software developed by :
-   
-     - IBM Corporation (http://www.ibm.com),
-         WSDL4J was the initial code contribution for the Apache Woden
-         project and some of the WSDL4J design and code has been reused.
-     - The W3C Consortium (http://www.w3c.org),
-         Common W3C XML Schema and DTD files are packaged with Apache Woden.
-
-   Please read the different LICENSE files present in the root directory of
-   this distribution.
-
-=========================================================================
-Woodstox Notice: 
-
-This product includes software developed by the Woodstox Project 
-(http://woodstox.codehaus.org/)
-
-This product currently only contains code developed by authors
-of specific components, as identified by the source code files.
-
-Since product implements StAX API, it has dependencies to StAX API
-classes.
-
-For additional credits (generally to people who reported problems)
-see CREDITS file.
-
-===========================================================================
-Apache xml-commons xml-apis Notice:
-
-   Portions of this software were originally based on the following:
-     - software copyright (c) 1999, IBM Corporation., http://www.ibm.com.
-     - software copyright (c) 1999, Sun Microsystems., http://www.sun.com.
-     - software copyright (c) 2000 World Wide Web Consortium, http://www.w3.org
-
-================================================================================================
-Apache  Xalan Notice: 
-
-Portions of this software was originally based on the following:
-     - software copyright (c) 1999-2002, Lotus Development Corporation., http://www.lotus.com.
-     - software copyright (c) 2001-2002, Sun Microsystems., http://www.sun.com.
-     - software copyright (c) 2003, IBM Corporation., http://www.ibm.com.
-     - voluntary contributions made by Ovidiu Predescu (ovidiu@cup.hp.com) on behalf of the

-       Apache Software Foundation and was originally developed at Hewlett Packard Company.

-================================================================================================
-Apache  OpenJPA Notice: 
-
-OpenJPA includes software developed by the SERP project
-Copyright (c) 2002-2006, A. Abram White. All rights reserved.
-
-OpenJPA includes the persistence and orm schemas from the JPA specifications.
-Copyright 2005-2009 Sun Microsystems, Inc. All rights reserved.
-OpenJPA elects to include this software in this distribution under the
-CDDL license.  You can obtain a copy of the License at:
-    https://glassfish.dev.java.net/public/CDDL+GPL.html
-The source code is available at:
-    https://glassfish.dev.java.net/source/browse/glassfish/
-
-OpenJPA includes software written by Miroslav Nachev
-OpenJPA uses test code written by Charles Tillman.
-================================================================================================
-Apache XmlSchema Notice:
-
-Portions Copyright 2006 International Business Machines Corp.
-================================================================================================

http://git-wip-us.apache.org/repos/asf/airavata/blob/51791dff/modules/distribution/gfac-server/src/main/resources/README
----------------------------------------------------------------------
diff --git a/modules/distribution/gfac-server/src/main/resources/README b/modules/distribution/gfac-server/src/main/resources/README
deleted file mode 100644
index 1539b8c..0000000
--- a/modules/distribution/gfac-server/src/main/resources/README
+++ /dev/null
@@ -1,121 +0,0 @@
-Apache Airavata Server - README.txt
-Licensed under Apache License 2.0 - http://www.apache.org/licenses/LICENSE-2.0
---------------------------------------------------------------------------------
-
-About
-=====
-Apache Airavata, a software framework to executing and managing computational jobs on 
-distributed computing resources including local clusters, supercomputers, national grids,

-academic and commercial clouds. Airavata can be used as individual components or 
-as an integrated solution to build science gateways or general-purpose distributed 
-application and workflow management systems. Users can use Airavata back end services 
-and build gadgets to deploy in open social containers such as Apache Rave and modify them

-to suit their needs. Airavata builds on general concepts of service oriented computing, 
-distributed messaging, and workflow composition and orchestration.
-
-This distribution allows you to run a standalone Airavata Server which includes all the 
-airavata services shipped with a default derby database as the backend registry.
-
-Release Notes
-=============
-0.11 is the tenth release of Airavata (skipped 0.1-INCUBATNG). This release focuses bug fixes
and GSISSH library for beta testing. For detailed tasks list, please see RELEASE_NOTES.
-
-Building from source
-====================
-For brief installation instructions, see INSTALL
-For detailed installation and further instructions refer http://airavata.apache.org/ - Documentation
section in left hand panel. Step by step with proper documentation are provided.
-
-Known Issues in This Release
-============================
-This is the base release and is focused on a good foundation and less on features. This 
-version is not recommended for production usage.
-
-Airavata Binary Distribution Directory Structure
-================================================
-
-    AIRAVATA_HOME
-		├── bin
-		│   ├── database_scripts <dir>
-		│   ├── airavata-server.bat
-		│   ├── airavata-server.properties
-		│   ├── airavata-server.sh
-		│   ├── authenticators.xml
-		│   ├── axis2.xml
-		│   ├── derby.sh
-		│   ├── host.xml
-		│   ├── log4j.properties
-		│   ├── logo.txt
-		│   ├── setenv.bat
-		│   ├── setenv.sh
-		│   └── startNetworkServer
-		├── lib <dir>
-		├── repository
-		│   ├── modules 
-		│   └── services
-		├── samples
-		│   ├── workflows <dir>
-		│   ├── echo_out.sh
-		│   └── echo.sh
-		├── INSTALL
-		├── LICENSE
-		├── NOTICE
-		└── README
-
-
-How to test and run samples
-===========================
-* If you built Airavata from source, and if you see "BUILD SUCCESS", then the test cases
should have passes.
-* The test cases are beyond unit level, they startup embedded services and run through basic
workflow use cases.
-* To walk through Airavata features, follow "Airavata in Five Minutes" tutorial at http://airavata.apache.org/documentation/tutorials/airavata-in-5-minutes.html
-* For intermediate level Airavata features, follow "Airavata in Ten Minutes" tutorial at
http://airavata.apache.org/documentation/tutorials/airavata-in-10-minutes.html 
-* For advanced use cases, please contact mailing lists - http://airavata.apache.org/community/mailing-lists.html
-
-Description of Directory Structure
-==================================
-    - bin
-      This contains all the configuration files & the executable scripts to run the Airavata
Server (Axis2 server 
-      with Airavata services which include messageBroker and messageBox with GFac Axis2 services),
& a standalone Apache Derby server.
-
-    - bin - database_scripts
-      Contains the database scripts which are used to create tables for messagebox and messagebroker
services
-
-    - samples
-      This contains sample workflow to try out & sample application scripts.
-
-    - lib
-      This contains all the libraries required to run the airavata server and/or derby server.
-
-    - repository - services
-      Contains deployed services in Axis2 runtime.
-
-    - README
-      This document.
-
-    - INSTALL
-      This document will contain information on installing Apache-Airavata.
-
-
-Other Available Distributions
-=============================
-
-Server Distributions
---------------------
-* Airavata Server
-  The Airavata Server binary distribution allows you to run a standalone Airavata Server
which includes all the airavata services 
-  shipped with a default derby database as the backend registry. For stable purposes, a mysql
configuration is recommended. 
-
-* Airavata Server Web Application
-  This is similar package as the Airavata Server but is distributed as the server Web Application
archive.
-  This war is compatible with Apache Tomcat application server. The war bundles all airavata
services 
-  enabled by defualt to startup a derby database as the backend registry. For stable purposes,
a mysql configuration is recommended. 
-
-Client Distributions
---------------------
-* Airavata XBaya
-  The Airavata XBaya distribution is a client GUI application with features to register applications
as web services, construct workflows,
-  execute and monitor workflows and browse the generated results from the airavata registry.
-
-* Airavata XBaya JNLP
-  The Airavata XBaya JNLP distribution is the simular GUI distribution but prepackeged to
be ready to be deployed to 
-   a web server as a web start application. The GUI provides features to register applications
as web services, construct workflows,
-  execute and monitor workflows and browse the generated results from the airavata registry.


http://git-wip-us.apache.org/repos/asf/airavata/blob/51791dff/modules/distribution/gfac-server/src/main/resources/bin/gfac-server.sh
----------------------------------------------------------------------
diff --git a/modules/distribution/gfac-server/src/main/resources/bin/gfac-server.sh b/modules/distribution/gfac-server/src/main/resources/bin/gfac-server.sh
deleted file mode 100755
index 839ef4e..0000000
--- a/modules/distribution/gfac-server/src/main/resources/bin/gfac-server.sh
+++ /dev/null
@@ -1,118 +0,0 @@
-#!/bin/bash
-
-# Licensed to the Apache Software Foundation (ASF) under one
-# or more contributor license agreements. See the NOTICE file
-# distributed with this work for additional information
-# regarding copyright ownership. The ASF licenses this file
-# to you under the Apache License, Version 2.0 (the
-# "License"); you may not use this file except in compliance
-# with the License. You may obtain a copy of the License at
-# 
-# http://www.apache.org/licenses/LICENSE-2.0
-# 
-# Unless required by applicable law or agreed to in writing,
-# software distributed under the License is distributed on an
-# "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
-# KIND, either express or implied. See the License for the
-# specific language governing permissions and limitations
-# under the License.
-
-. `dirname $0`/setenv.sh
-cd $AIRAVATA_HOME/bin
-LOGO_FILE="logo.txt"
-
-JAVA_OPTS=""
-AIRAVATA_COMMAND=""
-IS_DAEMON_MODE=false
-LOGO=true
-STOP=false
-FORCE=false
-SERVERS="--servers=gfac"
-for var in "$@"
-do
-    case $var in
-        -xdebug)
-            JAVA_OPTS="$JAVA_OPTS -Xdebug -Xnoagent -Xrunjdwp:transport=dt_socket,server=y,address=8000"
-	    AIRAVATA_COMMAND="$AIRAVATA_COMMAND $SERVERS"
-            shift
-        ;;
-        -security)
-            JAVA_OPTS="$JAVA_OPTS -Djava.security.manager -Djava.security.policy=$AIRAVATA_HOME/conf/axis2.policy
-Daxis2.home=$AIRAVATA_HOME"
-            shift
-        ;;
-	start)
-	   AIRAVATA_COMMAND="$AIRAVATA_COMMAND $SERVERS"
-	   IS_DAEMON_MODE=true
-            shift
-        ;;
-	stop)
-	    LOGO=false
-	    STOP=true
-	    AIRAVATA_COMMAND="$AIRAVATA_COMMAND $var"
-            shift
-        ;;
-	--force)
-	    FORCE=true
-            shift
-        ;;
-	-nologo)
-	    LOGO=false
-            shift
-        ;;
-        -h)
-            echo "Usage: airavata-server.sh [command-options]"
-            echo "command options:"
-	    echo "  start              Start server in daemon mode"
-	    echo "  stop [--force]     Stop all airavata servers."
-	    echo "  --<key>[=<value>]  Server setting(s) to override or introduce (overrides
values in airavata-server.properties)"
-            echo "  -nologo            Do not show airavata logo"
-            echo "  -xdebug            Start Airavata Server under JPDA debugger"
-            echo "  -security          Enable Java 2 security"
-            echo "  -h                 Display this help and exit"
-            shift
-            exit 0
-        ;;
-	*)
-	    AIRAVATA_COMMAND="$AIRAVATA_COMMAND $SERVERS $var"	    
-            shift
-    esac
-done
-if $LOGO ; then
-	if [ -e $LOGO_FILE ]
-	then
-		cat $LOGO_FILE
-	fi
-fi
-if $STOP && $FORCE ; 
-then
-	for f in `find . -name "server-start_*"`; do 
-		f_split=(${f//_/ });
-		echo "Found process file : $f" 
-		echo -n "    Sending kill signals to process ${f_split[1]}..."
-		out=`kill -9 ${f_split[1]} 2>&1`
-		if [ -z "$out" ]; then
-		    echo "done"
-		else
-		    echo "failed (REASON: $out)"
-		fi
-		echo -n "    Removing process file..."
-		out=`rm $f 2>&1`
-		if [ -z "$out" ]; then
-		    echo "done"
-		else
-		    echo "failed (REASON: $out)"
-		fi
-	done
-else
-	if $IS_DAEMON_MODE ; then
-		echo "Starting airavata server in daemon mode..."
-		nohup java $JAVA_OPTS -classpath "$XBAYA_CLASSPATH" \
-		    -Djava.endorsed.dirs="$AIRAVATA_HOME/lib/endorsed":"$JAVA_HOME/jre/lib/endorsed":"$JAVA_HOME/lib/endorsed"
\
-		    org.apache.airavata.server.ServerMain $AIRAVATA_COMMAND $* > gfac-server.out &

- 	else
-		java $JAVA_OPTS -classpath "$XBAYA_CLASSPATH" \
-		    -Djava.endorsed.dirs="$AIRAVATA_HOME/lib/endorsed":"$JAVA_HOME/jre/lib/endorsed":"$JAVA_HOME/lib/endorsed"
\
-		    org.apache.airavata.server.ServerMain $AIRAVATA_COMMAND $*
-	fi
-fi
-

http://git-wip-us.apache.org/repos/asf/airavata/blob/51791dff/modules/distribution/gfac-server/src/main/resources/bin/logo.txt
----------------------------------------------------------------------
diff --git a/modules/distribution/gfac-server/src/main/resources/bin/logo.txt b/modules/distribution/gfac-server/src/main/resources/bin/logo.txt
deleted file mode 100644
index e886438..0000000
--- a/modules/distribution/gfac-server/src/main/resources/bin/logo.txt
+++ /dev/null
@@ -1,34 +0,0 @@
-...._....................._..............._...._......................_.........
-.../ \..._.__...__._..___| |__...___...../ \..(_)_.__.__.___...____._|.|_.__._..
-../ _ \.| '_ \./ _` |/ __| '_ \./ _ \.../ _ \.| | '__/ _` \ \./ / _` | __/ _` |.
-./ ___ \| |_) | (_| | (__| |.| |  __/../ ___ \| | |.| (_| |\ V / (_| | || (_| |.
-/_/...\_\ .__/.\__,_|\___|_|.|_|\___|./_/...\_\_|_|..\__,_|.\_/.\__,_|\__\__,_|.
-........|_|.....................................................................
-................................................................................
-................,+????++~..~~++..+????????+??++.++~...~+=???+++.................
-..............:???????....:::...~??????????????.~..::...=????????...............
-............????????..~~..?????..??????????????.?????..~~~.~???????.............
-...........?????????I,~I~~??????.+????????????.~??????~=~..?????????~...........
-.........?????++??????..????????:.??????????I..????????..????????+????..........
-........??.....???????....???????...???????+..+??????+.I.????????.....?,........
-........????==????????..??..?????..=???????=..?????,.=+?.?????????===??=........
-......=??????????+????..+??=.???=.~??????????,.???=,???,.????=+??????????.......
-....??????????+...+I++..???,=...:??????????????.....+??..++I?+..,??????????.....
-....???????=??..........??..+??.:=:.???????......??..??=..........?=???????=....
-....??????..?...........+?..???.....???????......???.??...........~=.??????=....
-....~???~.~..............?..???.~=..,??????...7..???.?.:..............~????:....
-...7....7 ...............?..????. ...??????... .????.?.?.............I ..:.:....
-.....+7=,.+?................????:,I...?????..=.?????.?.............??~.=7+......
-..........????..............??????~...~??..~~??????..?...........+???,..........
-...........???............=.+???????,.?+:.?????????..+...........???+...........
-............??............?,.??????.,??..??????????.,............???............
-...........??,.............=.,????.?+....????????I.I..............=?............
-..........I?..................+??.:?~.....=??????..................??...........
-..........??...?...............??.:?=......??????..............?...??...........
-............++?..............?.????...?....??????.+..............++I............
-.............................?.??????~....???????.?.............................
-............................~~.??????......??????...............................
-.............................=???????......???????+.............................
-..........................=I??++?+++?......?+++++++?+...........................
-..........................,..77..77.........  ..  ...7..........................
-................................................................................

http://git-wip-us.apache.org/repos/asf/airavata/blob/51791dff/modules/distribution/gfac-server/src/main/resources/bin/setenv.bat
----------------------------------------------------------------------
diff --git a/modules/distribution/gfac-server/src/main/resources/bin/setenv.bat b/modules/distribution/gfac-server/src/main/resources/bin/setenv.bat
deleted file mode 100644
index 223f8cd..0000000
--- a/modules/distribution/gfac-server/src/main/resources/bin/setenv.bat
+++ /dev/null
@@ -1,43 +0,0 @@
-rem Licensed to the Apache Software Foundation (ASF) under one
-rem or more contributor license agreements. See the NOTICE file
-rem distributed with this work for additional information
-rem regarding copyright ownership. The ASF licenses this file
-rem to you under the Apache License, Version 2.0 (the
-rem "License"); you may not use this file except in compliance
-rem with the License. You may obtain a copy of the License at
-rem
-rem http://www.apache.org/licenses/LICENSE-2.0
-rem
-rem Unless required by applicable law or agreed to in writing,
-rem software distributed under the License is distributed on an
-rem "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
-rem KIND, either express or implied. See the License for the
-rem specific language governing permissions and limitations
-rem under the License.
-
-@echo off
-
-:checkJava
-if "%JAVA_HOME%" == "" goto noJavaHome
-if not exist "%JAVA_HOME%\bin\java.exe" goto noJavaHome
-goto initialize
-
-:noJavaHome
-echo You must set the JAVA_HOME environment variable before running Airavata.
-goto end
-
-:initialize
-if "%AIRAVATA_HOME%"=="" set AIRAVATA_HOME=%~sdp0..
-SET curDrive=%cd:~0,1%
-SET airavataDrive=%AIRAVATA_HOME:~0,1%
-if not "%curDrive%" == "%airavataDrive%" %airavataDrive%:
-goto updateClasspath
-
-rem ----- update classpath -----------------------------------------------------
-:updateClasspath
-cd %AIRAVATA_HOME%
-set XBAYA_CLASSPATH=
-FOR %%C in ("%AIRAVATA_HOME%\lib\*.jar") DO set XBAYA_CLASSPATH=!XBAYA_CLASSPATH!;..\lib\%%~nC%%~xC
-FOR %%C in ("%AIRAVATA_HOME%\repository\services\*.jar") DO set XBAYA_CLASSPATH=!XBAYA_CLASSPATH!;..\repository\services\%%~nC%%~xC
-
-:end
\ No newline at end of file

http://git-wip-us.apache.org/repos/asf/airavata/blob/51791dff/modules/distribution/gfac-server/src/main/resources/bin/setenv.sh
----------------------------------------------------------------------
diff --git a/modules/distribution/gfac-server/src/main/resources/bin/setenv.sh b/modules/distribution/gfac-server/src/main/resources/bin/setenv.sh
deleted file mode 100755
index 84673db..0000000
--- a/modules/distribution/gfac-server/src/main/resources/bin/setenv.sh
+++ /dev/null
@@ -1,77 +0,0 @@
-#!/bin/sh
-
-# Licensed to the Apache Software Foundation (ASF) under one
-# or more contributor license agreements. See the NOTICE file
-# distributed with this work for additional information
-# regarding copyright ownership. The ASF licenses this file
-# to you under the Apache License, Version 2.0 (the
-# "License"); you may not use this file except in compliance
-# with the License. You may obtain a copy of the License at
-# 
-# http://www.apache.org/licenses/LICENSE-2.0
-# 
-# Unless required by applicable law or agreed to in writing,
-# software distributed under the License is distributed on an
-# "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
-# KIND, either express or implied. See the License for the
-# specific language governing permissions and limitations
-# under the License.
-
-
-# Get standard environment variables
-# if JAVA_HOME is not set we're not happy
-if [ -z "$JAVA_HOME" ]; then
-  echo "You must set the JAVA_HOME variable before running Airavata Scripts."
-  exit 1
-fi
-
-# OS specific support.  $var _must_ be set to either true or false.
-cygwin=false
-os400=false
-case "`uname`" in
-CYGWIN*) cygwin=true;;
-OS400*) os400=true;;
-esac
-
-# resolve links - $0 may be a softlink
-PRG="$0"
-
-while [ -h "$PRG" ]; do
-  ls=`ls -ld "$PRG"`
-  link=`expr "$ls" : '.*-> \(.*\)$'`
-  if expr "$link" : '.*/.*' > /dev/null; then
-    PRG="$link"
-  else
-    PRG=`dirname "$PRG"`/"$link"
-  fi
-done
-
-
-PRGDIR=`dirname "$PRG"`
-
-# Only set AIRAVATA_HOME if not already set
-[ -z "$AIRAVATA_HOME" ] && AIRAVATA_HOME=`cd "$PRGDIR/.." ; pwd`
-
-XBAYA_CLASSPATH=""
-
-
-
-for f in "$AIRAVATA_HOME"/lib/*.jar
-do
-  XBAYA_CLASSPATH="$XBAYA_CLASSPATH":$f
-done
-
-for f in "$AIRAVATA_HOME"/repository/services/*.jar
-do
-  XBAYA_CLASSPATH="$XBAYA_CLASSPATH":$f
-done
-
-XBAYA_CLASSPATH="$XBAYA_HOME":"$XBAYA_HOME/conf":"$XBAYA_CLASSPATH":"$CLASSPATH"
-
-
-
-
-export AIRAVATA_HOME
-export XBAYA_CLASSPATH
-
-

http://git-wip-us.apache.org/repos/asf/airavata/blob/51791dff/modules/distribution/orchestrator-server/pom.xml
----------------------------------------------------------------------
diff --git a/modules/distribution/orchestrator-server/pom.xml b/modules/distribution/orchestrator-server/pom.xml
deleted file mode 100644
index 476704d..0000000
--- a/modules/distribution/orchestrator-server/pom.xml
+++ /dev/null
@@ -1,155 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-
-<!--Licensed to the Apache Software Foundation (ASF) under one or more contributor 
-	license agreements. See the NOTICE file distributed with this work for additional 
-	information regarding copyright ownership. The ASF licenses this file to 
-	you under the Apache License, Version 2.0 (theÏ "License"); you may not use 
-	this file except in compliance with the License. You may obtain a copy of 
-	the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required 
-	by applicable law or agreed to in writing, software distributed under the 
-	License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS 
-	OF ANY ~ KIND, either express or implied. See the License for the specific 
-	language governing permissions and limitations under the License. -->
-
-<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd">
-	<parent>
-		<groupId>org.apache.airavata</groupId>
-		<artifactId>distribution</artifactId>
-		<version>0.15-SNAPSHOT</version>
-		<relativePath>../pom.xml</relativePath>
-	</parent>
-
-	<modelVersion>4.0.0</modelVersion>
-	<artifactId>apache-orchestrator-server</artifactId>
-	<name>Orchestrator server distribution</name>
-	<packaging>pom</packaging>
-	<url>http://airavata.apache.org/</url>
-
-	<build>
-		<plugins>
-			<plugin>
-				<groupId>org.apache.maven.plugins</groupId>
-				<artifactId>maven-dependency-plugin</artifactId>
-				<version>2.8</version>
-				<executions>
-					<execution>
-						<id>unpack</id>
-						<phase>compile</phase>
-						<goals>
-							<goal>unpack</goal>
-						</goals>
-						<configuration>
-							<artifactItems>
-								<artifactItem>
-									<groupId>org.apache.airavata</groupId>
-									<artifactId>airavata-server-configuration</artifactId>
-									<version>${project.version}</version>
-									<type>jar</type>
-								</artifactItem>
-							</artifactItems>
-							<!--includes>**/*.war</includes -->
-							<outputDirectory>${project.build.directory}/conf</outputDirectory>
-						</configuration>
-					</execution>
-				</executions>
-			</plugin>
-
-			<plugin>
-				<groupId>org.codehaus.gmaven</groupId>
-				<artifactId>gmaven-plugin</artifactId>
-				<version>1.4</version>
-				<executions>
-					<execution>
-						<id>generate-timestamp</id>
-						<phase>package</phase>
-						<goals>
-							<goal>execute</goal>
-						</goals>
-						<configuration>
-							<source>
-								import java.util.Date
-								import java.text.MessageFormat
-								project.properties['buildTimestamp'] =
-								MessageFormat.format("{0,date,dd-MM-yyyy}", new
-								Date())
-							</source>
-						</configuration>
-					</execution>
-				</executions>
-			</plugin>
-			<plugin>
-				<groupId>org.apache.maven.plugins</groupId>
-				<artifactId>maven-assembly-plugin</artifactId>
-				<executions>
-					<execution>
-						<id>distribution-package</id>
-						<phase>package</phase>
-						<goals>
-							<goal>single</goal>
-						</goals>
-						<configuration>
-							<finalName>${archieve.name}-${project.version}</finalName>
-							<descriptors>
-								<descriptor>src/main/assembly/bin-assembly.xml</descriptor>
-								<!-- <descriptor>src/main/assembly/src-assembly.xml</descriptor> -->
-							</descriptors>
-							<attach>false</attach>
-						</configuration>
-					</execution>
-				</executions>
-			</plugin>
-
-			<plugin>
-				<groupId>org.codehaus.mojo</groupId>
-				<artifactId>build-helper-maven-plugin</artifactId>
-				<version>1.7</version>
-				<executions>
-					<execution>
-						<id>attach-artifacts</id>
-						<phase>package</phase>
-						<goals>
-							<goal>attach-artifact</goal>
-						</goals>
-						<configuration>
-							<artifacts>
-								<artifact>
-									<file>${airavata.bin.zip}</file>
-									<type>zip</type>
-									<classifier>bin</classifier>
-								</artifact>
-								<artifact>
-									<file>${airavata.bin.tar.gz}</file>
-									<type>tar.gz</type>
-									<classifier>bin</classifier>
-								</artifact>
-							</artifacts>
-						</configuration>
-					</execution>
-				</executions>
-			</plugin>
-		</plugins>
-	</build>
-
-	<dependencies>
-		<dependency>
-			<groupId>org.apache.airavata</groupId>
-			<artifactId>airavata-standalone-server</artifactId>
-			<version>${project.version}</version>
-		</dependency>
-		<dependency>
-			<groupId>org.apache.airavata</groupId>
-			<artifactId>airavata-orchestrator-service</artifactId>
-			<version>${project.version}</version>
-		</dependency>
-	</dependencies>
-
-
-	<properties>
-		<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
-		<archieve.name>apache-orchestrator-server</archieve.name>
-		<airavata.dist.name>${archieve.name}-${project.version}</airavata.dist.name>
-		<airavata.work.dir>${project.build.directory}/tests/${airavata.dist.name}</airavata.work.dir>
-		<airavata.bin.zip>${project.build.directory}/${airavata.dist.name}-bin.zip</airavata.bin.zip>
-		<airavata.bin.tar.gz>${project.build.directory}/${airavata.dist.name}-bin.tar.gz</airavata.bin.tar.gz>
-	</properties>
-</project>

http://git-wip-us.apache.org/repos/asf/airavata/blob/51791dff/modules/distribution/orchestrator-server/src/main/assembly/bin-assembly.xml
----------------------------------------------------------------------
diff --git a/modules/distribution/orchestrator-server/src/main/assembly/bin-assembly.xml b/modules/distribution/orchestrator-server/src/main/assembly/bin-assembly.xml
deleted file mode 100644
index 219f412..0000000
--- a/modules/distribution/orchestrator-server/src/main/assembly/bin-assembly.xml
+++ /dev/null
@@ -1,146 +0,0 @@
-<!--Licensed to the Apache Software Foundation (ASF) under one or more contributor 
-	license agreements. See the NOTICE file distributed with this work for additional 
-	information regarding copyright ownership. The ASF licenses this file to 
-	you under the Apache License, Version 2.0 (theÏ "License"); you may not use 
-	this file except in compliance with the License. You may obtain a copy of 
-	the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required 
-	by applicable law or agreed to in writing, software distributed under the 
-	License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS 
-	OF ANY ~ KIND, either express or implied. See the License for the specific 
-	language governing permissions and limitations under the License. -->
-
-<!DOCTYPE assembly [
-        <!ELEMENT assembly (id|includeBaseDirectory|baseDirectory|formats|fileSets|dependencySets)*>
-        <!ELEMENT id (#PCDATA)>
-        <!ELEMENT includeBaseDirectory (#PCDATA)>
-        <!ELEMENT baseDirectory (#PCDATA)>
-        <!ELEMENT formats (format)*>
-        <!ELEMENT format (#PCDATA)>
-        <!ELEMENT fileSets (fileSet)*>
-        <!ELEMENT fileSet (directory|outputDirectory|includes)*>
-        <!ELEMENT directory (#PCDATA)>
-        <!ELEMENT outputDirectory (#PCDATA)>
-        <!ELEMENT includes (include)*>
-        <!ELEMENT include (#PCDATA)>
-        <!ELEMENT dependencySets (dependencySet)*>
-        <!ELEMENT dependencySet (outputDirectory|includes)*>
-        ]>
-<assembly>
-	<id>bin</id>
-	<includeBaseDirectory>true</includeBaseDirectory>
-	<baseDirectory>${archieve.name}-${version}</baseDirectory>
-	<formats>
-		<format>tar.gz</format>
-		<format>zip</format>
-	</formats>
-
-	<fileSets>
-
-		<!-- ********************** copy release notes files ********************** -->
-		<fileSet>
-			<directory>../../../</directory>
-			<outputDirectory>.</outputDirectory>
-			<includes>
-				<include>RELEASE_NOTES</include>
-			</includes>
-		</fileSet>
-		<!-- ********************** copy licenses, readme etc. ********************** -->
-		<fileSet>
-			<directory>src/main/resources/</directory>
-			<outputDirectory>.</outputDirectory>
-			<includes>
-				<include>LICENSE</include>
-				<include>NOTICE</include>
-				<include>README</include>
-				<include>INSTALL</include>
-			</includes>
-		</fileSet>
-
-		<!-- ********************** copy database scripts ********************** -->
-		<fileSet>
-			<directory>../../ws-messenger/messagebroker/src/main/resources/database_scripts
-			</directory>
-			<outputDirectory>bin/database_scripts
-			</outputDirectory>
-			<includes>
-				<include>*sql*</include>
-			</includes>
-		</fileSet>
-		<fileSet>
-			<directory>../../ws-messenger/messagebox/src/main/resources/database_scripts
-			</directory>
-			<outputDirectory>bin/database_scripts
-			</outputDirectory>
-			<includes>
-				<include>*sql*</include>
-			</includes>
-		</fileSet>
-		<fileSet>
-			<directory>../../registry/airavata-jpa-registry/src/main/resources
-			</directory>
-			<outputDirectory>bin/database_scripts
-			</outputDirectory>
-			<includes>
-				<include>*sql*</include>
-			</includes>
-		</fileSet>
-		<fileSet>
-			<directory>../../app-catalog/app-catalog-data/src/main/resources
-			</directory>
-			<outputDirectory>bin/database_scripts
-			</outputDirectory>
-			<includes>
-				<include>*sql*</include>
-			</includes>
-		</fileSet>
-		<fileSet>
-			<directory>src/main/resources/bin</directory>
-			<outputDirectory>bin</outputDirectory>
-			<fileMode>777</fileMode>
-			<includes>
-				<include>*.sh</include>
-				<include>*.bat</include>
-				<include>logo.txt</include>
-				<include>startNetworkServer</include>
-			</includes>
-		</fileSet>
-		<fileSet>
-			<directory>${project.build.directory}/conf</directory>
-			<outputDirectory>bin</outputDirectory>
-			<includes>
-				<include>airavata-server.properties</include>
-				<include>log4j.properties</include>
-			</includes>
-		</fileSet>
-		<fileSet>
-			<directory>src/main/resources/conf</directory>
-			<outputDirectory>bin</outputDirectory>
-			<includes>
-				<include>**/*</include>
-			</includes>
-		</fileSet>
-
-	</fileSets>
-
-	<dependencySets>
-		<dependencySet>
-			<outputDirectory>lib</outputDirectory>
-			<outputFileNameMapping>${artifact.artifactId}.${artifact.extension}
-			</outputFileNameMapping>
-			<includes>
-				<include>org.apache.derby:derby:jar</include>
-				<include>org.apache.derby:derbytools:jar</include>
-				<include>org.apache.derby:derbynet:jar</include>
-				<include>org.apache.derby:derbyclient:jar</include>
-			</includes>
-		</dependencySet>
-		<dependencySet>
-			<outputDirectory>lib</outputDirectory>
-		 	<includes>
-				<include>*:*:jar</include>
-            </includes>
-		</dependencySet>
-
-	</dependencySets>
-
-</assembly>

http://git-wip-us.apache.org/repos/asf/airavata/blob/51791dff/modules/distribution/orchestrator-server/src/main/assembly/src-assembly.xml
----------------------------------------------------------------------
diff --git a/modules/distribution/orchestrator-server/src/main/assembly/src-assembly.xml b/modules/distribution/orchestrator-server/src/main/assembly/src-assembly.xml
deleted file mode 100644
index 6a093ed..0000000
--- a/modules/distribution/orchestrator-server/src/main/assembly/src-assembly.xml
+++ /dev/null
@@ -1,75 +0,0 @@
-<!--Licensed to the Apache Software Foundation (ASF) under one
-  ~ or more contributor license agreements. See the NOTICE file
-  ~ distributed with this work for additional information
-  ~ regarding copyright ownership. The ASF licenses this file
-  ~ to you under the Apache License, Version 2.0 (the
-  ~ "License"); you may not use this file except in compliance
-  ~ with the License. You may obtain a copy of the License at
-  ~
-  ~ http://www.apache.org/licenses/LICENSE-2.0
-  ~
-  ~ Unless required by applicable law or agreed to in writing,
-  ~ software distributed under the License is distributed on an
-  ~ "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
-  ~ KIND, either express or implied. See the License for the
-  ~ specific language governing permissions and limitations
-  ~ under the License.
-  -->
-
-<assembly>
-    <id>src</id>
-    <includeBaseDirectory>true</includeBaseDirectory> 
-    <baseDirectory>${archieve.name}-${version}</baseDirectory>
-    <formats>
-        <format>tar.gz</format>  
-        <format>zip</format>
-    </formats>
-
-    <fileSets>
-        <fileSet>
-            <directory>../..</directory>
-            <outputDirectory></outputDirectory>
-            <includes>
-                <include>NOTICE</include>
-                <include>LICENSE</include>
-                <include>README</include>
-                <include>RELEASE_NOTES</include>
-		<include>DISCLAIMER</include>
-		<include>INSTALL</include>
-            </includes>
-            <filtered>true</filtered>
-        </fileSet>
-        <fileSet>
-            <directory>../..</directory>
-            <outputDirectory></outputDirectory>
-            <useDefaultExcludes>true</useDefaultExcludes>
-            <includes>
-                <include>pom.xml</include>
-                <include>modules/**</include>
-                <include>samples/**</include>
-            </includes>
-
-            <excludes>
-                                <!-- Exclusions from org.apache.resources:apache-source-release-assembly-descriptor.
-                     Note that they assume that all sources are located under an "src" directory.
This
-                     is not the case for Axis2, which doesn't use the standard Maven 2 conventions.
-                     Thus we may still encounter some issues here. -->
-                <exclude>%regex[(?!((?!${project.build.directory}/)[^/]+/)*src/).*${project.build.directory}.*]</exclude>
-                <exclude>%regex[(?!((?!${project.build.directory}/)[^/]+/)*src/)(.*/)?maven-eclipse\.xml]</exclude>
-                <exclude>%regex[(?!((?!${project.build.directory}/)[^/]+/)*src/)(.*/)?\.project]</exclude>
-                <exclude>%regex[(?!((?!${project.build.directory}/)[^/]+/)*src/)(.*/)?\.classpath]</exclude>
-                <exclude>%regex[(?!((?!${project.build.directory}/)[^/]+/)*src/)(.*/)?[^/]*\.iws]</exclude>
-                <exclude>%regex[(?!((?!${project.build.directory}/)[^/]+/)*src/)(.*/)?[^/]*\.ipr]</exclude>
-                <exclude>%regex[(?!((?!${project.build.directory}/)[^/]+/)*src/)(.*/)?[^/]*\.iml]</exclude>
-                <exclude>%regex[(?!((?!${project.build.directory}/)[^/]+/)*src/)(.*/)?\.settings(/.*)?]</exclude>
-                <exclude>%regex[(?!((?!${project.build.directory}/)[^/]+/)*src/)(.*/)?\.externalToolBuilders(/.*)?]</exclude>
-                <exclude>%regex[(?!((?!${project.build.directory}/)[^/]+/)*src/)(.*/)?\.deployables(/.*)?]</exclude>
-                <exclude>%regex[(?!((?!${project.build.directory}/)[^/]+/)*src/)(.*/)?\.wtpmodules(/.*)?]</exclude>
-                <exclude>%regex[(?!((?!${project.build.directory}/)[^/]+/)*src/)(.*/)?cobertura\.ser]</exclude>
-                <exclude>%regex[(?!((?!${project.build.directory}/)[^/]+/)*src/)(.*/)?pom\.xml\.releaseBackup]</exclude>
-                <exclude>%regex[(?!((?!${project.build.directory}/)[^/]+/)*src/)(.*/)?release\.properties]</exclude>
-            </excludes>
-
-        </fileSet>
-          </fileSets>
-</assembly>

http://git-wip-us.apache.org/repos/asf/airavata/blob/51791dff/modules/distribution/orchestrator-server/src/main/resources/INSTALL
----------------------------------------------------------------------
diff --git a/modules/distribution/orchestrator-server/src/main/resources/INSTALL b/modules/distribution/orchestrator-server/src/main/resources/INSTALL
deleted file mode 100644
index 0324e61..0000000
--- a/modules/distribution/orchestrator-server/src/main/resources/INSTALL
+++ /dev/null
@@ -1,55 +0,0 @@
-Installing  Apache Airavata 0.11
--------------------------------
-
-Prerequisites
--------------
-Java 1.5 or later
-Maven (tested on v 3.0.2)
-
-Build Apache Airavata from Source
----------------------------------
-* Unzip/untar the source file or check out from svn.
-* cd to project folder and type
-	$ mvn clean install
-	Note: in order to skip tests use the command
-			$ mvn clean install -Dmaven.test.skip=true
-* The compressed binary distribution is created at <PROJECT DIR>/modules/distribution/airavata-server/target/apache-airavata-server-<airavata-version>-bin.zip
-
-Installing the Airavata Server
-------------------------------
-No installation is necessary. Just extract the compressed distribution.
-Note: For customizing the default configurations of the Airavata Server please 
-      refer to Airavata web-site (http://airavata.apache.org/) and/or Airavata 
-      mailing lists (http://airavata.apache.org/community/mailing-lists.html)
-
-Starting Apache Airavata Server
--------------------------------
-* Navigate to <AIRAVATA_HOME>/bin
-* type for following command to start the Airavata Server
-	MAC/Unix systems
-		$ sh airavata-server.sh
-	Windows
-		> airavata-server.bat
-	Note: Pass "-h" as parameters to see more options when starting the server
-
-Starting Apache Derby Server
--------------------------------
-Users have the option to star the derby server separately
-* Navigate to <AIRAVATA_HOME>/bin
-* type for following command to start the Airavata Server
-	MAC/Unix systems
-		$ sh derby.sh
-	Windows
-		<Not supported in this version>
-	Note: Pass "-h" as parameters to see more options when starting the server
-
-Running Tests
--------------
-Once the binary is unzipped, instructions to run the tests should be followed from README
-
-Tutorials 
-----------
-The airavata website has instructions for basic tutorials:
-* For basic understanding of how Airavata works - http://airavata.apache.org/documentation/tutorials/airavata-in-5-minutes.html
-* Describing and executing applications using Airavata - http://airavata.apache.org/documentation/tutorials/airavata-in-10-minutes.html
-* Advanced tutorial to provide understanding of how to run sample workflows distributed with
Airavata - http://airavata.apache.org/documentation/tutorials/advanced-workflow-samples.html


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