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From chath...@apache.org
Subject [22/22] airavata git commit: Merge branch 'moduleRefactor'
Date Fri, 05 Jun 2015 15:03:21 GMT
Merge branch 'moduleRefactor'


Project: http://git-wip-us.apache.org/repos/asf/airavata/repo
Commit: http://git-wip-us.apache.org/repos/asf/airavata/commit/093643ac
Tree: http://git-wip-us.apache.org/repos/asf/airavata/tree/093643ac
Diff: http://git-wip-us.apache.org/repos/asf/airavata/diff/093643ac

Branch: refs/heads/master
Commit: 093643ac3e090faafb1620ed71fcbe47d548fd1a
Parents: 13c2e79 5a648a6
Author: Chathuri Wimalasena <chathuri@apache.org>
Authored: Fri Jun 5 11:02:41 2015 -0400
Committer: Chathuri Wimalasena <chathuri@apache.org>
Committed: Fri Jun 5 11:02:41 2015 -0400

----------------------------------------------------------------------
 airavata-api/airavata-api-server/pom.xml        |    2 +-
 .../server/handler/AiravataServerHandler.java   |    4 +-
 .../client_samples/createExperiment.cpp         |    4 +-
 .../resources/client_samples/createProject.cpp  |    4 +-
 .../client_samples/getExperimentOutputs.cpp     |    4 +-
 .../client_samples/getExperimentStatus.cpp      |    4 +-
 .../client_samples/launchExperiment.cpp         |    4 +-
 .../lib/apache/airavata/api/Airavata.py         |    8 +-
 .../airavata-api/airavataAPI.thrift             |    4 +-
 .../airavata-api/experimentModel.thrift         |    2 +-
 .../main/resources/airavata-client.properties   |   14 +-
 modules/gfac/gfac-core/pom.xml                  |    2 +-
 .../services/impl/BigRed2TestWithSSHAuth.java   |    2 +-
 .../impl/GSISSHProviderTestWithMyProxyAuth.java |    2 +-
 .../gfac/services/impl/LocalProviderTest.java   |    2 +-
 modules/gfac/gfac-service/pom.xml               |    2 +-
 modules/integration-tests/pom.xml               |    2 +-
 modules/orchestrator/orchestrator-core/pom.xml  |    2 +-
 .../orchestrator/core/ValidatorTest.java        |    2 +-
 .../app/catalog/model/DataMovementProtocol.java |   76 -
 .../catalog/model/DataMovementProtocolPK.java   |   74 -
 .../catalog/model/JobSubmissionProtocol.java    |   77 -
 .../catalog/model/JobSubmissionProtocolPK.java  |   74 -
 .../app/catalog/resources/AbstractResource.java |  382 ---
 .../resources/AppDeploymentResource.java        |  446 ---
 .../resources/AppEnvironmentResource.java       |  293 --
 .../catalog/resources/AppInterfaceResource.java |  363 ---
 .../resources/AppModuleMappingResource.java     |  317 --
 .../catalog/resources/AppModuleResource.java    |  344 --
 .../resources/ApplicationInputResource.java     |  454 ---
 .../resources/ApplicationOutputResource.java    |  432 ---
 .../catalog/resources/BatchQueueResource.java   |  357 ---
 .../resources/CloudSubmissionResource.java      |  298 --
 .../ComputeHostPreferenceResource.java          |  413 ---
 .../ComputeResourceFileSystemResource.java      |  307 --
 .../resources/ComputeResourceResource.java      |  351 ---
 .../DataMovementInterfaceResource.java          |  339 --
 .../resources/DataMovementProtocolResource.java |  360 ---
 .../catalog/resources/GSISSHExportResource.java |  324 --
 .../resources/GSISSHSubmissionResource.java     |  373 ---
 .../resources/GatewayProfileResource.java       |  318 --
 .../resources/GlobusGKEndpointResource.java     |  321 --
 .../resources/GlobusJobSubmissionResource.java  |  315 --
 .../resources/GridftpDataMovementResource.java  |  279 --
 .../resources/GridftpEndpointResource.java      |  317 --
 .../catalog/resources/HostAliasResource.java    |  317 --
 .../resources/HostIPAddressResource.java        |  318 --
 .../resources/JobManagerCommandResource.java    |  307 --
 .../JobSubmissionInterfaceResource.java         |  339 --
 .../JobSubmissionProtocolResource.java          |  359 ---
 .../resources/LibraryApendPathResource.java     |  292 --
 .../resources/LibraryPrepandPathResource.java   |  291 --
 .../resources/LocalDataMovementResource.java    |  249 --
 .../resources/LocalSubmissionResource.java      |  293 --
 .../resources/ModuleLoadCmdResource.java        |  300 --
 .../resources/PostJobCommandResource.java       |  333 --
 .../resources/PreJobCommandResource.java        |  333 --
 .../core/app/catalog/resources/Resource.java    |   89 -
 .../resources/ResourceJobManagerResource.java   |  301 --
 .../resources/ScpDataMovementResource.java      |  308 --
 .../resources/SshJobSubmissionResource.java     |  332 --
 .../resources/UnicoreDataMovementResource.java  |  255 --
 .../resources/UnicoreJobSubmissionResource.java |  328 --
 .../resources/WorkflowInputResource.java        |  451 ---
 .../resources/WorkflowOutputResource.java       |  410 ---
 .../app/catalog/resources/WorkflowResource.java |  382 ---
 .../catalog/impl/ExperimentCatalogImpl.java     |    2 +-
 .../catalog/impl/ExperimentRegistry.java        |    2 +-
 .../catalog/impl/GatewayRegistry.java           |    2 +-
 .../impl/LoggingExperimentCatalogImpl.java      |    2 +-
 .../catalog/impl/ProjectRegistry.java           |    2 +-
 .../catalog/impl/RegistryFactory.java           |    2 +-
 .../core/experiment/catalog/impl/UserReg.java   |    2 +-
 .../core/experimet/catalog/JPAConstants.java    |   33 -
 .../core/experimet/catalog/Resource.java        |   71 -
 .../core/experimet/catalog/ResourceType.java    |   50 -
 .../core/experimet/catalog/ResourceUtils.java   |  525 ---
 .../catalog/impl/ExperimentCatalogImpl.java     |  735 -----
 .../catalog/impl/ExperimentRegistry.java        | 2983 ------------------
 .../experimet/catalog/impl/GatewayRegistry.java |  115 -
 .../impl/LoggingExperimentCatalogImpl.java      |   97 -
 .../experimet/catalog/impl/ProjectRegistry.java |  303 --
 .../experimet/catalog/impl/RegistryFactory.java |   80 -
 .../core/experimet/catalog/impl/UserReg.java    |   41 -
 .../model/AdvancedInputDataHandling.java        |  113 -
 .../model/AdvancedOutputDataHandling.java       |  104 -
 .../catalog/model/ApplicationInput.java         |  165 -
 .../catalog/model/ApplicationInput_PK.java      |   65 -
 .../catalog/model/ApplicationOutput.java        |  142 -
 .../catalog/model/ApplicationOutput_PK.java     |   64 -
 .../Computational_Resource_Scheduling.java      |  174 -
 .../experimet/catalog/model/Configuration.java  |   80 -
 .../catalog/model/Configuration_PK.java         |   74 -
 .../catalog/model/DataTransferDetail.java       |   91 -
 .../experimet/catalog/model/ErrorDetail.java    |  176 --
 .../experimet/catalog/model/Experiment.java     |  299 --
 .../catalog/model/ExperimentConfigData.java     |  142 -
 .../catalog/model/Experiment_Input.java         |  170 -
 .../catalog/model/Experiment_Input_PK.java      |   64 -
 .../catalog/model/Experiment_Output.java        |  143 -
 .../catalog/model/Experiment_Output_PK.java     |   64 -
 .../core/experimet/catalog/model/Gateway.java   |   76 -
 .../experimet/catalog/model/Gateway_Worker.java |   82 -
 .../catalog/model/Gateway_Worker_PK.java        |   64 -
 .../core/experimet/catalog/model/JobDetail.java |  135 -
 .../experimet/catalog/model/JobDetails_PK.java  |   64 -
 .../core/experimet/catalog/model/NodeInput.java |  163 -
 .../experimet/catalog/model/NodeInput_PK.java   |   64 -
 .../experimet/catalog/model/NodeOutput.java     |  140 -
 .../experimet/catalog/model/NodeOutput_PK.java  |   64 -
 .../catalog/model/Notification_Email.java       |   81 -
 .../core/experimet/catalog/model/Project.java   |  125 -
 .../experimet/catalog/model/ProjectUser.java    |   81 -
 .../experimet/catalog/model/ProjectUser_PK.java |   64 -
 .../core/experimet/catalog/model/QosParam.java  |  103 -
 .../core/experimet/catalog/model/Status.java    |  146 -
 .../experimet/catalog/model/TaskDetail.java     |  221 --
 .../core/experimet/catalog/model/Users.java     |   55 -
 .../catalog/model/WorkflowNodeDetail.java       |  155 -
 .../catalog/resources/AbstractResource.java     |  317 --
 .../AdvanceInputDataHandlingResource.java       |  160 -
 .../AdvancedOutputDataHandlingResource.java     |  150 -
 .../resources/ApplicationInputResource.java     |  230 --
 .../resources/ApplicationOutputResource.java    |  208 --
 .../ComputationSchedulingResource.java          |  221 --
 .../catalog/resources/ConfigDataResource.java   |  194 --
 .../resources/ConfigurationResource.java        |  204 --
 .../resources/DataTransferDetailResource.java   |  276 --
 .../catalog/resources/ErrorDetailResource.java  |  215 --
 .../resources/ExperimentInputResource.java      |  225 --
 .../resources/ExperimentOutputResource.java     |  204 --
 .../catalog/resources/ExperimentResource.java   |  831 -----
 .../resources/ExperimentSummaryResource.java    |  134 -
 .../catalog/resources/GatewayResource.java      |  437 ---
 .../catalog/resources/JobDetailResource.java    |  376 ---
 .../catalog/resources/NodeInputResource.java    |  227 --
 .../catalog/resources/NodeOutputResource.java   |  207 --
 .../resources/NotificationEmailResource.java    |  119 -
 .../catalog/resources/ProjectResource.java      |  508 ---
 .../catalog/resources/ProjectUserResource.java  |  123 -
 .../catalog/resources/QosParamResource.java     |  144 -
 .../catalog/resources/StatusResource.java       |  181 --
 .../catalog/resources/TaskDetailResource.java   |  748 -----
 .../catalog/resources/UserResource.java         |  186 --
 .../core/experimet/catalog/resources/Utils.java | 1011 ------
 .../catalog/resources/WorkerResource.java       |  725 -----
 .../resources/WorkflowNodeDetailResource.java   |  515 ---
 .../experimet/catalog/utils/QueryGenerator.java |  128 -
 .../utils/ThriftDataModelConversion.java        |  686 ----
 .../src/main/resources/META-INF/app-catalog.xml |   67 -
 .../src/main/resources/META-INF/persistence.xml |   29 -
 .../app/catalog/ComputeResourceTest.java        |  297 --
 .../catalog/AbstractResourceTest.java           |    4 +-
 .../catalog/ComputationalSchedulingTest.java    |    2 +-
 .../ConfigurationExperimentCatResourceTest.java |    2 +-
 .../catalog/ConfigurationResourceTest.java      |   58 -
 .../catalog/ExecutionErrorResourceTest.java     |   95 -
 .../catalog/ExperimentCatalogUseCaseTest.java   |    6 +-
 .../catalog/ExperimentDataResourceTest.java     |  107 -
 .../ExperimentExperimentCatResourceTest.java    |    2 +-
 ...xperimentInputExperimentCatResourceTest.java |    2 +-
 .../catalog/ExperimentInputResourceTest.java    |   75 -
 .../catalog/ExperimentMetadataResourceTest.java |   87 -
 ...perimentOutputExperimentCatResourceTest.java |    2 +-
 .../catalog/ExperimentOutputResourceTest.java   |   76 -
 .../catalog/ExperimentResourceTest.java         |   77 -
 .../catalog/GFacJobDataResourceTest.java        |   77 -
 .../catalog/GFacJobStatusResourceTest.java      |   87 -
 .../GatewayExperimentCatResourceTest.java       |    2 +-
 .../experiment/catalog/GatewayResourceTest.java |  120 -
 .../catalog/GramDataResourceTest.java           |   72 -
 .../catalog/NodeDataResourceTest.java           |   72 -
 .../catalog/OrchestratorDataResourceTest.java   |   69 -
 .../TaskDetailExperimentCatResourceTest.java    |    2 +-
 .../catalog/TaskDetailResourceTest.java         |   93 -
 .../catalog/UserExperimentCatResourceTest.java  |    2 +-
 .../experiment/catalog/UserResourceTest.java    |   54 -
 .../experiment/catalog/WorkerResourceTest.java  |  122 -
 .../catalog/WorkflowDataResourceTest.java       |  106 -
 ...flowNodeDetailExperimentCatResourceTest.java |    2 +-
 .../catalog/WorkflowNodeDetailResourceTest.java |   85 -
 .../experiment/catalog/util/Initialize.java     |    2 +-
 modules/workflow-model/workflow-engine/pom.xml  |    2 +-
 .../workflow/engine/WorkflowEngineImpl.java     |    2 +-
 .../engine/interpretor/WorkflowInterpreter.java |    2 +-
 modules/workflow/workflow-core/pom.xml          |    2 +-
 .../core/SimpleWorkflowInterpreter.java         |    2 +-
 .../core/parser/AiravataWorkflowParser.java     |    2 +-
 modules/xbaya-gui/pom.xml                       |    2 +-
 .../dialogs/registry/NewRegistryUserDialog.java |   10 +-
 samples/java-client/experiment/pom.xml          |    2 +-
 191 files changed, 70 insertions(+), 35522 deletions(-)
----------------------------------------------------------------------



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