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From lah...@apache.org
Subject [46/62] [abbrv] airavata git commit: fixing LSF issues
Date Thu, 19 Mar 2015 15:03:12 GMT
fixing LSF issues


Project: http://git-wip-us.apache.org/repos/asf/airavata/repo
Commit: http://git-wip-us.apache.org/repos/asf/airavata/commit/13b480d8
Tree: http://git-wip-us.apache.org/repos/asf/airavata/tree/13b480d8
Diff: http://git-wip-us.apache.org/repos/asf/airavata/diff/13b480d8

Branch: refs/heads/queue-gfac-rabbitmq
Commit: 13b480d84cdfcaf110536688309834122db8917e
Parents: c2bacf2 10c5abf
Author: Lahiru Gunathilake <glahiru@gmail.com>
Authored: Wed Mar 11 16:21:50 2015 -0400
Committer: Lahiru Gunathilake <glahiru@gmail.com>
Committed: Wed Mar 11 16:21:50 2015 -0400

----------------------------------------------------------------------
 .../server/handler/AiravataServerHandler.java   |   34 +-
 .../java/org/apache/airavata/api/Airavata.java  | 5264 +++++++++++-------
 .../main/resources/lib/airavata/Airavata.cpp    |  381 ++
 .../src/main/resources/lib/airavata/Airavata.h  |  161 +
 .../lib/airavata/Airavata_server.skeleton.cpp   |    5 +
 .../lib/airavata/computeResourceModel_types.cpp |  203 +-
 .../lib/airavata/computeResourceModel_types.h   |   38 +-
 .../resources/lib/Airavata/API/Airavata.php     |  296 +
 .../Model/AppCatalog/ComputeResource/Types.php  |   49 +
 .../client/samples/CreateLaunchExperiment.java  |  584 +-
 .../tools/RegisterSampleApplications.java       |  158 +-
 .../computeresource/AuthenticationMode.java     |   70 +
 .../computeresource/UnicoreJobSubmission.java   |  222 +-
 .../airavataAPI.thrift                          |    6 +
 .../computeResourceModel.thrift                 |   25 +-
 .../catalog/data/impl/ComputeResourceImpl.java  |    1 +
 .../data/model/UnicoreJobSubmission.java        |   16 +-
 .../data/resources/AbstractResource.java        |    1 +
 .../resources/UnicoreJobSubmissionResource.java |   39 +-
 .../catalog/data/util/AppCatalogJPAUtils.java   |    1 +
 .../data/util/AppCatalogThriftConversion.java   |    3 +-
 .../src/main/resources/appcatalog-derby.sql     |    1 +
 .../src/main/resources/appcatalog-mysql.sql     |    1 +
 .../registry/jpa/impl/ExperimentRegistry.java   |    3 +
 24 files changed, 5039 insertions(+), 2523 deletions(-)
----------------------------------------------------------------------


http://git-wip-us.apache.org/repos/asf/airavata/blob/13b480d8/airavata-api/airavata-client-sdks/java-client-samples/src/main/java/org/apache/airavata/client/samples/CreateLaunchExperiment.java
----------------------------------------------------------------------
diff --cc airavata-api/airavata-client-sdks/java-client-samples/src/main/java/org/apache/airavata/client/samples/CreateLaunchExperiment.java
index b5a5bcc,bb914fa..ed141b9
--- a/airavata-api/airavata-client-sdks/java-client-samples/src/main/java/org/apache/airavata/client/samples/CreateLaunchExperiment.java
+++ b/airavata-api/airavata-client-sdks/java-client-samples/src/main/java/org/apache/airavata/client/samples/CreateLaunchExperiment.java
@@@ -58,13 -58,13 +58,13 @@@ public class CreateLaunchExperiment 
      private static final String DEFAULT_GATEWAY = "php_reference_gateway";
      private static Airavata.Client airavataClient;
  
 -    private static String echoAppId = "Echo_8506337e-ab7a-46b6-9b71-4a461b6c5e35";
 +    private static String echoAppId = "Echo_61988d1f-7ca9-47ba-9212-a0ac2e973cf1";
      private static String mpiAppId = "HelloMPI_720e159f-198f-4daa-96ca-9f5eafee92c9";
      private static String wrfAppId = "WRF_7ad5da38-c08b-417c-a9ea-da9298839762";
-     private static String amberAppId = "Amber_a56d457c-f239-4c0b-ba00-66bda936f7bc";
+     private static String amberAppId = "Amber_aa083c86-4680-4002-b3ef-fad93c181926";
      private static String gromacsAppId = "GROMACS_05622038-9edd-4cb1-824e-0b7cb993364b";
      private static String espressoAppId = "ESPRESSO_10cc2820-5d0b-4c63-9546-8a8b595593c1";
 -    private static String lammpsAppId = "LAMMPS_10893eb5-3840-438c-8446-d26c7ecb001f";
 +    private static String lammpsAppId = "LAMMPS_2472685b-8acf-497e-aafe-cc66fe5f4cb6";
      private static String nwchemAppId = "NWChem_2c8fee64-acf9-4a89-b6d3-91eb53c7640c";
      private static String trinityAppId = "Trinity_e894acf5-9bca-46e8-a1bd-7e2d5155191a";
      private static String autodockAppId = "AutoDock_43d9fdd0-c404-49f4-b913-3abf9080a8c9";
@@@ -162,7 -183,6 +183,7 @@@
  //                final String expId = createExperimentTRINITYStampede(airavataClient);
  //                final String expId = createExperimentAUTODOCKStampede(airavataClient);
// this is not working , we need to register AutoDock app on stampede
  //                final String expId = createExperimentForLSF(airavataClient);
-                 final String expId = createExperimentLAMMPSForLSF(airavataClient);
++//                final String expId = createExperimentLAMMPSForLSF(airavataClient);
  //            	  final String expId = "Ultrascan_ln_eb029947-391a-4ccf-8ace-9bafebe07cc0";
                  System.out.println("Experiment ID : " + expId);
  //                updateExperiment(airavata, expId);
@@@ -1356,8 -1112,9 +1113,7 @@@
              for (InputDataObjectType inputDataObjectType : exInputs) {
                  inputDataObjectType.setValue("Hello World");
              }
 -        
              List<OutputDataObjectType> exOut = client.getApplicationOutputs(echoAppId);
- 
 -          
              Project project = ProjectModelUtil.createProject("default", "lg11w", "test project");
              String projectId = client.createProject(DEFAULT_GATEWAY, project);
  

http://git-wip-us.apache.org/repos/asf/airavata/blob/13b480d8/airavata-api/airavata-client-sdks/java-client-samples/src/main/java/org/apache/airavata/client/tools/RegisterSampleApplications.java
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