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From ramin...@apache.org
Subject [3/6] airavata git commit: Added xbaya distribution. AIRAVATA-1471
Date Sat, 15 Nov 2014 00:31:19 GMT
http://git-wip-us.apache.org/repos/asf/airavata/blob/c4f3c662/modules/distribution/xbaya-gui/src/main/resources/NOTICE
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diff --git a/modules/distribution/xbaya-gui/src/main/resources/NOTICE b/modules/distribution/xbaya-gui/src/main/resources/NOTICE
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@@ -0,0 +1,163 @@
+Apache Airavata
+Copyright 2013 The Apache Software Foundation
+
+This product includes software developed at
+The Apache Software Foundation (http://www.apache.org/).
+
+===============================================================================
+Apache Xerces Java Notice:
+
+   Portions of this software were originally based on the following:
+     - software copyright (c) 1999, IBM Corporation., http://www.ibm.com.
+     - software copyright (c) 1999, Sun Microsystems., http://www.sun.com.
+     - voluntary contributions made by Paul Eng on behalf of the
+       Apache Software Foundation that were originally developed at iClick, Inc.,
+       software copyright (c) 1999.
+
+================================================================================
+Apache XmlBeans Notice: 
+
+   Portions of this software were originally based on the following:
+     - software copyright (c) 2000-2003, BEA Systems, <http://www.bea.com/>.
+
+   Aside from contributions to the Apache XMLBeans project, this
+   software also includes:
+
+    - one or more source files from the Apache Xerces-J and Apache Axis
+      products, Copyright (c) 1999-2003 Apache Software Foundation
+
+    - W3C XML Schema documents Copyright 2001-2003 (c) World Wide Web
+      Consortium (Massachusetts Institute of Technology, European Research
+      Consortium for Informatics and Mathematics, Keio University)
+
+    - resolver.jar from Apache Xml Commons project,
+      Copyright (c) 2001-2003 Apache Software Foundation
+
+    - Piccolo XML Parser for Java from http://piccolo.sourceforge.net/,
+      Copyright 2002 Yuval Oren under the terms of the Apache Software License 2.0
+
+    - JSR-173 Streaming API for XML from http://sourceforge.net/projects/xmlpullparser/,
+      Copyright 2005 BEA under the terms of the Apache Software License 2.0
+      
+=========================================================================================
+Apache Axis2 Notice: (axis2-*, mex-1.5.1-impl)
+
+Portions Copyright 2006 International Business Machines Corp.
+Portions Copyright 2005-2007 WSO2, Inc.
+
+This product also includes schemas and specification developed by:
+- the W3C consortium (http://www.w3c.org)
+
+This product also includes WS-* schemas developed by International
+Business Machines Corporation, Microsoft Corporation, BEA Systems, 
+TIBCO Software, SAP AG, Sonic Software, and VeriSign
+
+This product also includes a WSDL developed by salesforce.com
+- Copyright 1999-2006 salesforce.com, inc.
+Portions of the included xmlbeans library were originally based on the following:
+- software copyright (c) 2000-2003, BEA Systems, <http://www.bea.com/>.
+
+====================================================================================
+Apache Derby Notice:
+
+Portions of Derby were originally developed by
+International Business Machines Corporation and are
+licensed to the Apache Software Foundation under the
+"Software Grant and Corporate Contribution License Agreement",
+informally known as the "Derby CLA".
+The following copyright notice(s) were affixed to portions of the code
+with which this file is now or was at one time distributed
+and are placed here unaltered.
+
+(C) Copyright 1997,2004 International Business Machines Corporation.  All rights reserved.
+
+(C) Copyright IBM Corp. 2003. 
+
+=======================
+
+The portion of the functionTests under 'nist' was originally 
+developed by the National Institute of Standards and Technology (NIST), 
+an agency of the United States Department of Commerce, and adapted by
+International Business Machines Corporation in accordance with the NIST
+Software Acknowledgment and Redistribution document at
+http://www.itl.nist.gov/div897/ctg/sql_form.htm
+
+========================
+
+The JDBC apis for small devices and JDBC3 (under java/stubs/jsr169 and
+java/stubs/jdbc3) were produced by trimming sources supplied by the
+Apache Harmony project. In addition, the Harmony SerialBlob and
+SerialClob implementations are used. The following notice covers the Harmony sources:
+
+Portions of Harmony were originally developed by
+Intel Corporation and are licensed to the Apache Software
+Foundation under the "Software Grant and Corporate Contribution
+License Agreement", informally known as the "Intel Harmony CLA".
+
+=============================================================================
+Apache Woden Notice:
+
+   This product also includes software developed by :
+   
+     - IBM Corporation (http://www.ibm.com),
+         WSDL4J was the initial code contribution for the Apache Woden
+         project and some of the WSDL4J design and code has been reused.
+     - The W3C Consortium (http://www.w3c.org),
+         Common W3C XML Schema and DTD files are packaged with Apache Woden.
+
+   Please read the different LICENSE files present in the root directory of
+   this distribution.
+
+=========================================================================
+Woodstox Notice: 
+
+This product includes software developed by the Woodstox Project 
+(http://woodstox.codehaus.org/)
+
+This product currently only contains code developed by authors
+of specific components, as identified by the source code files.
+
+Since product implements StAX API, it has dependencies to StAX API
+classes.
+
+For additional credits (generally to people who reported problems)
+see CREDITS file.
+
+===========================================================================
+Apache xml-commons xml-apis Notice:
+
+   Portions of this software were originally based on the following:
+     - software copyright (c) 1999, IBM Corporation., http://www.ibm.com.
+     - software copyright (c) 1999, Sun Microsystems., http://www.sun.com.
+     - software copyright (c) 2000 World Wide Web Consortium, http://www.w3.org
+
+================================================================================================
+Apache  Xalan Notice: 
+
+Portions of this software was originally based on the following:
+     - software copyright (c) 1999-2002, Lotus Development Corporation., http://www.lotus.com.
+     - software copyright (c) 2001-2002, Sun Microsystems., http://www.sun.com.
+     - software copyright (c) 2003, IBM Corporation., http://www.ibm.com.
+     - voluntary contributions made by Ovidiu Predescu (ovidiu@cup.hp.com) on behalf of the

+       Apache Software Foundation and was originally developed at Hewlett Packard Company.

+================================================================================================
+Apache  OpenJPA Notice: 
+
+OpenJPA includes software developed by the SERP project
+Copyright (c) 2002-2006, A. Abram White. All rights reserved.
+
+OpenJPA includes the persistence and orm schemas from the JPA specifications.
+Copyright 2005-2009 Sun Microsystems, Inc. All rights reserved.
+OpenJPA elects to include this software in this distribution under the
+CDDL license.  You can obtain a copy of the License at:
+    https://glassfish.dev.java.net/public/CDDL+GPL.html
+The source code is available at:
+    https://glassfish.dev.java.net/source/browse/glassfish/
+
+OpenJPA includes software written by Miroslav Nachev
+OpenJPA uses test code written by Charles Tillman.
+================================================================================================
+Apache XmlSchema Notice:
+
+Portions Copyright 2006 International Business Machines Corp.
+================================================================================================
\ No newline at end of file

http://git-wip-us.apache.org/repos/asf/airavata/blob/c4f3c662/modules/distribution/xbaya-gui/src/main/resources/README
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diff --git a/modules/distribution/xbaya-gui/src/main/resources/README b/modules/distribution/xbaya-gui/src/main/resources/README
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+Apache Airavata XBaya - README.txt
+Licensed under Apache License 2.0 - http://www.apache.org/licenses/LICENSE-2.0
+--------------------------------------------------------------------------------
+
+About
+=====
+Apache Airavata, a software framework to executing and managing computational jobs on 
+distributed computing resources including local clusters, supercomputers, national grids,

+academic and commercial clouds. Airavata can be used as individual components or 
+as an integrated solution to build science gateways or general-purpose distributed 
+application and workflow management systems. Users can use Airavata back end services 
+and build gadgets to deploy in open social containers such as Apache Rave and modify them

+to suit their needs. Airavata builds on general concepts of service oriented computing, 
+distributed messaging, and workflow composition and orchestration.
+
+This distribution is a client gui application capable of composing workflows, application

+descriptors & communicating with the airavata server to persist user data, run &
monitor 
+experiments and analyze the results.
+
+Release Notes
+=============
+0.11 is the tenth release of Airavata (skipped 0.1-INCUBATNG). This release focuses GFac
rearchitecturing and more GFac level changes. For detailed tasks list, please see RELEASE_NOTES.
+
+Building from source
+====================
+For brief installation instructions, see INSTALL
+For detailed installation and further instructions refer http://airavata.apache.org/ - Documentation
section in left hand panel. Step by step with proper documentation are provided.
+
+Known Issues in This Release
+============================
+This is the base release and is focused on a good foundation and less on features. This 
+version is not recommended for production usage.
+
+Airavata XBaya Distribution Directory Structure
+================================================
+
+    AIRAVATA_XBAYA
+		├── bin
+		│   ├── airavata-client.properties
+		│   ├── log4j.properties
+		│   ├── setenv.bat
+		│   ├── setenv.sh
+		│   ├── xbaya-gui.bat
+		│   └── xbaya-gui.sh
+		├── lib
+		├── samples
+		├── INSTALL
+		├── LICENSE
+		├── NOTICE
+		└── README
+
+How to test and run samples
+===========================
+* If you built Airavata from source, and if you see "BUILD SUCCESS", then the test cases
should have passes.
+* The test cases are beyond unit level, they startup embedded services and run through basic
workflow use cases.
+* To walk through Airavata features, follow "Airavata in Five Minutes" tutorial at http://airavata.apache.org/documentation/tutorials/airavata-in-5-minutes.html
+* For intermediate level Airavata features, follow "Airavata in Ten Minutes" tutorial at
http://airavata.apache.org/documentation/tutorials/airavata-in-10-minutes.html 
+* For advanced use cases, please contact mailing lists - http://airavata.apache.org/community/mailing-lists.html
+
+Description of Directory Structure
+==================================
+
+    - bin
+      This contains the configuration files for Airavata XBaya & the scripts to run XBaya
GUI Application.
+
+    - samples
+      This contains sample scripts to define the sample descriptor in http://airavata.apache.org/documentation/tutorials/airavata-in-10-minutes.html
+
+    - lib
+      This contains all the libraries required to run the client side code with the jars
required to run XBaya GUI.
+
+    - README
+      This document.
+
+    - INSTALL
+          This document will contain information on installing Apache-Airavata XBaya.
+
+Other Available Distributions
+=============================
+
+Server Distributions
+--------------------
+* Airavata Server
+  The Airavata Server binary distribution allows you to run a standalone Airavata Server
which includes all the airavata services 
+  shipped with a default derby database as the backend registry. For stable purposes, a mysql
configuration is recommended. 
+
+* Airavata Server Web Application
+  This is similar package as the Airavata Server but is distributed as the server Web Application
archive.
+  This war is compatible with Apache Tomcat application server. The war bundles all airavata
services 
+  enabled by defualt to startup a derby database as the backend registry. For stable purposes,
a mysql configuration is recommended. 
+
+Client Distributions
+--------------------
+* Airavata XBaya
+  The Airavata XBaya distribution is a client GUI application with features to register applications
as web services, construct workflows,
+  execute and monitor workflows and browse the generated results from the airavata registry.
+
+* Airavata XBaya JNLP
+  The Airavata XBaya JNLP distribution is the simular GUI distribution but prepackeged to
be ready to be deployed to 
+   a web server as a web start application. The GUI provides features to register applications
as web services, construct workflows,
+  execute and monitor workflows and browse the generated results from the airavata registry.


http://git-wip-us.apache.org/repos/asf/airavata/blob/c4f3c662/modules/distribution/xbaya-gui/src/main/resources/airavata-logo.gif
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http://git-wip-us.apache.org/repos/asf/airavata/blob/c4f3c662/modules/distribution/xbaya-gui/src/main/resources/bin/setenv.bat
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diff --git a/modules/distribution/xbaya-gui/src/main/resources/bin/setenv.bat b/modules/distribution/xbaya-gui/src/main/resources/bin/setenv.bat
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+rem Licensed to the Apache Software Foundation (ASF) under one
+rem or more contributor license agreements. See the NOTICE file
+rem distributed with this work for additional information
+rem regarding copyright ownership. The ASF licenses this file
+rem to you under the Apache License, Version 2.0 (the
+rem "License"); you may not use this file except in compliance
+rem with the License. You may obtain a copy of the License at
+rem
+rem http://www.apache.org/licenses/LICENSE-2.0
+rem
+rem Unless required by applicable law or agreed to in writing,
+rem software distributed under the License is distributed on an
+rem "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+rem KIND, either express or implied. See the License for the
+rem specific language governing permissions and limitations
+rem under the License.
+
+@echo off
+
+:checkJava
+if "%JAVA_HOME%" == "" goto noJavaHome
+if not exist "%JAVA_HOME%\bin\java.exe" goto noJavaHome
+goto initialize
+
+:noJavaHome
+echo You must set the JAVA_HOME environment variable before running Airavata.
+goto end
+
+:initialize
+if "%XBAYA_HOME%"=="" set XBAYA_HOME=%~sdp0..
+SET curDrive=%cd:~0,1%
+SET xBayaDrive=%XBAYA_HOME:~0,1%
+if not "%curDrive%" == "%xBayaDrive%" %xBayaDrive%:
+goto updateClasspath
+
+rem ----- update classpath -----------------------------------------------------
+:updateClasspath
+cd %XBAYA_HOME%
+set XBAYA_CLASSPATH=
+FOR %%C in ("%XBAYA_HOME%\lib\*.jar") DO set XBAYA_CLASSPATH=!XBAYA_CLASSPATH!;..\lib\%%~nC%%~xC
+
+:end
\ No newline at end of file

http://git-wip-us.apache.org/repos/asf/airavata/blob/c4f3c662/modules/distribution/xbaya-gui/src/main/resources/bin/setenv.sh
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diff --git a/modules/distribution/xbaya-gui/src/main/resources/bin/setenv.sh b/modules/distribution/xbaya-gui/src/main/resources/bin/setenv.sh
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@@ -0,0 +1,77 @@
+#!/bin/sh
+
+# Licensed to the Apache Software Foundation (ASF) under one
+# or more contributor license agreements. See the NOTICE file
+# distributed with this work for additional information
+# regarding copyright ownership. The ASF licenses this file
+# to you under the Apache License, Version 2.0 (the
+# "License"); you may not use this file except in compliance
+# with the License. You may obtain a copy of the License at
+# 
+# http://www.apache.org/licenses/LICENSE-2.0
+# 
+# Unless required by applicable law or agreed to in writing,
+# software distributed under the License is distributed on an
+# "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+# KIND, either express or implied. See the License for the
+# specific language governing permissions and limitations
+# under the License.
+
+
+# Get standard environment variables
+# if JAVA_HOME is not set we're not happy
+if [ -z "$JAVA_HOME" ]; then
+  echo "You must set the JAVA_HOME variable before running Airavata Scripts."
+  exit 1
+fi
+
+# OS specific support.  $var _must_ be set to either true or false.
+cygwin=false
+os400=false
+case "`uname`" in
+CYGWIN*) cygwin=true;;
+OS400*) os400=true;;
+esac
+
+# resolve links - $0 may be a softlink
+PRG="$0"
+
+while [ -h "$PRG" ]; do
+  ls=`ls -ld "$PRG"`
+  link=`expr "$ls" : '.*-> \(.*\)$'`
+  if expr "$link" : '.*/.*' > /dev/null; then
+    PRG="$link"
+  else
+    PRG=`dirname "$PRG"`/"$link"
+  fi
+done
+
+
+PRGDIR=`dirname "$PRG"`
+
+# Only set AIRAVATA_HOME if not already set
+[ -z "$AIRAVATA_HOME" ] && AIRAVATA_HOME=`cd "$PRGDIR/.." ; pwd`
+
+XBAYA_CLASSPATH=""
+
+
+
+for f in "$AIRAVATA_HOME"/lib/*.jar
+do
+  XBAYA_CLASSPATH="$XBAYA_CLASSPATH":$f
+done
+
+for f in "$AIRAVATA_HOME"/repository/services/*.jar
+do
+  XBAYA_CLASSPATH="$XBAYA_CLASSPATH":$f
+done
+
+XBAYA_CLASSPATH="$XBAYA_HOME":"$XBAYA_HOME/conf":"$XBAYA_CLASSPATH":"$CLASSPATH"
+
+
+
+
+export AIRAVATA_HOME
+export XBAYA_CLASSPATH
+
+

http://git-wip-us.apache.org/repos/asf/airavata/blob/c4f3c662/modules/distribution/xbaya-gui/src/main/resources/bin/xbaya-gui.bat
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diff --git a/modules/distribution/xbaya-gui/src/main/resources/bin/xbaya-gui.bat b/modules/distribution/xbaya-gui/src/main/resources/bin/xbaya-gui.bat
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+@echo off
+rem Licensed to the Apache Software Foundation (ASF) under one
+rem or more contributor license agreements. See the NOTICE file
+rem distributed with this work for additional information
+rem regarding copyright ownership. The ASF licenses this file
+rem to you under the Apache License, Version 2.0 (the
+rem "License"); you may not use this file except in compliance
+rem with the License. You may obtain a copy of the License at
+rem
+rem http://www.apache.org/licenses/LICENSE-2.0
+rem
+rem Unless required by applicable law or agreed to in writing,
+rem software distributed under the License is distributed on an
+rem "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+rem KIND, either express or implied. See the License for the
+rem specific language governing permissions and limitations
+rem under the License.
+
+setlocal EnableDelayedExpansion
+call "%~dp0"setenv.bat
+
+cd "%XBAYA_HOME%\bin"
+"%JAVA_HOME%\bin\java.exe" %JAVA_OPTS% -classpath "%XBAYA_CLASSPATH%" org.apache.airavata.xbaya.XBaya
%*

http://git-wip-us.apache.org/repos/asf/airavata/blob/c4f3c662/modules/distribution/xbaya-gui/src/main/resources/bin/xbaya-gui.sh
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diff --git a/modules/distribution/xbaya-gui/src/main/resources/bin/xbaya-gui.sh b/modules/distribution/xbaya-gui/src/main/resources/bin/xbaya-gui.sh
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+++ b/modules/distribution/xbaya-gui/src/main/resources/bin/xbaya-gui.sh
@@ -0,0 +1,22 @@
+#!/bin/sh
+
+# Licensed to the Apache Software Foundation (ASF) under one
+# or more contributor license agreements. See the NOTICE file
+# distributed with this work for additional information
+# regarding copyright ownership. The ASF licenses this file
+# to you under the Apache License, Version 2.0 (the
+# "License"); you may not use this file except in compliance
+# with the License. You may obtain a copy of the License at
+# 
+# http://www.apache.org/licenses/LICENSE-2.0
+# 
+# Unless required by applicable law or agreed to in writing,
+# software distributed under the License is distributed on an
+# "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+# KIND, either express or implied. See the License for the
+# specific language governing permissions and limitations
+# under the License.
+
+. `dirname $0`/setenv.sh
+$JAVA_HOME/bin/java $JAVA_OPTS -classpath "$XBAYA_CLASSPATH" \
+    org.apache.airavata.xbaya.XBaya $* 

http://git-wip-us.apache.org/repos/asf/airavata/blob/c4f3c662/modules/distribution/xbaya-gui/src/main/resources/conf/log4j.properties
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diff --git a/modules/distribution/xbaya-gui/src/main/resources/conf/log4j.properties b/modules/distribution/xbaya-gui/src/main/resources/conf/log4j.properties
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+++ b/modules/distribution/xbaya-gui/src/main/resources/conf/log4j.properties
@@ -0,0 +1,40 @@
+#
+# Licensed to the Apache Software Foundation (ASF) under one
+# or more contributor license agreements. See the NOTICE file
+# distributed with this work for additional information
+# regarding copyright ownership. The ASF licenses this file
+# to you under the Apache License, Version 2.0 (the
+# "License"); you may not use this file except in compliance
+# with the License. You may obtain a copy of the License at
+#
+# http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing,
+# software distributed under the License is distributed on an
+# "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+# KIND, either express or implied. See the License for the
+# specific language governing permissions and limitations
+# under the License.
+#
+
+# Set root category priority to INFO and its only appender to CONSOLE.
+log4j.rootCategory=INFO, CONSOLE,LOGFILE
+log4j.rootLogger=INFO, CONSOLE, LOGFILE
+
+# Set the enterprise logger priority to FATAL
+log4j.logger.org.apache.axis2.enterprise=FATAL
+log4j.logger.de.hunsicker.jalopy.io=FATAL
+log4j.logger.httpclient.wire.header=FATAL
+log4j.logger.org.apache.commons.httpclient=FATAL
+         
+# CONSOLE is set to be a ConsoleAppender using a PatternLayout.
+log4j.appender.CONSOLE=org.apache.log4j.ConsoleAppender
+log4j.appender.CONSOLE.layout=org.apache.log4j.PatternLayout
+log4j.appender.CONSOLE.layout.ConversionPattern=[%p] %m%n
+
+# LOGFILE is set to be a File appender using a PatternLayout.
+log4j.appender.LOGFILE=org.apache.log4j.FileAppender
+log4j.appender.LOGFILE.File=../../bin/axis2.log
+log4j.appender.LOGFILE.Append=true
+log4j.appender.LOGFILE.layout=org.apache.log4j.PatternLayout
+log4j.appender.LOGFILE.layout.ConversionPattern=%d [%t] %-5p %c %x - %m%n

http://git-wip-us.apache.org/repos/asf/airavata/blob/c4f3c662/modules/distribution/xbaya-gui/src/main/resources/jnlp/INSTALL
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diff --git a/modules/distribution/xbaya-gui/src/main/resources/jnlp/INSTALL b/modules/distribution/xbaya-gui/src/main/resources/jnlp/INSTALL
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+Installing  Apache Airavata XBaya 0.11
+-------------------------------------
+
+Prerequisites
+-------------
+Java 1.5 or later
+Maven (tested on v 3.0.2)
+
+Build Apache Airavata XBaya JNLP from Source
+--------------------------------------------
+* Unzip/untar the source file or check out from svn.
+* cd to project folder and type
+	$ mvn clean install
+	Note: in order to skip tests use the command
+			$ mvn clean install -Dmaven.test.skip=true
+* The compressed binary distribution is created at <PROJECT DIR>/modules/distribution/xbaya-gui/target/apache-airavata-xbaya-gui-<airavata-version>-jnlp.zip
+
+Installing the JNLP Distribution
+--------------------------------
+* Extract the Apache Airavata XBaya JNLP distribution to a web accessible location
+* Update the the xbaya.jnlp file "codebase" with the web access location of the jnlp
+      eg: <jnlp ... codebase="http://example-server.com/airavata/xbaya/" ...>
+           ...
+           ...
+          </jnlp> 
+
+Starting Apache Airavata XBaya JNLP
+-----------------------------------
+Using the web browser
+	* Using a browser navigate to the url <JNLP-web-access-url>/xbaya.jnlp
+		eg: http://example-server.com/airavata/xbaya/xbaya.jnlp
+	* Following the web start download instructions to run XBaya
+
+Using the commandline
+	* type for following command in the commandline to start the Airavata XBaya
+			$ javaws <JNLP-web-access-url>/xbaya.jnlp
+				eg: $ javaws http://example-server.com/airavata/xbaya/xbaya.jnlp
+
+Running Tests
+-------------
+Once the binary is unzipped, instructions to run the tests should be followed from README
+
+Tutorials 
+----------
+The airavata website has instructions for basic tutorials:
+* For basic understanding of how Airavata works - http://airavata.apache.org/documentation/tutorials/airavata-in-5-minutes.html
+* Describing and executing applications using Airavata - http://airavata.apache.org/documentation/tutorials/airavata-in-10-minutes.html
+* Advanced tutorial to provide understanding of how to run sample workflows distributed with
Airavata - http://airavata.apache.org/documentation/tutorials/advanced-workflow-samples.html


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