accumulo-notifications mailing list archives

Site index · List index
Message view « Date » · « Thread »
Top « Date » · « Thread »
From "Christopher Tubbs (JIRA)" <j...@apache.org>
Subject [jira] [Commented] (ACCUMULO-1355) Accumulo ingestion hangs/fails for 300 MB+ file, local machine memory usage grows to 10GB+
Date Sun, 28 Apr 2013 07:36:15 GMT

    [ https://issues.apache.org/jira/browse/ACCUMULO-1355?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=13643930#comment-13643930
] 

Christopher Tubbs commented on ACCUMULO-1355:
---------------------------------------------

I just ran it perfectly fine with MiniAccumuloCluster on the 1.5 branch (after increasing
its TServer's memory limit to 2g) in about 20 seconds on my box. You must have something else
going on.
                
> Accumulo ingestion hangs/fails for 300 MB+ file, local machine memory usage grows to
10GB+
> ------------------------------------------------------------------------------------------
>
>                 Key: ACCUMULO-1355
>                 URL: https://issues.apache.org/jira/browse/ACCUMULO-1355
>             Project: Accumulo
>          Issue Type: Bug
>          Components: client, thrift, tserver
>    Affects Versions: 1.4.2, 1.4.3
>            Reporter: Nasheb Ismaily
>            Assignee: Billie Rinaldi
>            Priority: Blocker
>
> *Bug:*
> I am attempting to ingest a 300+ MB file into Accumulo, however the ingestion process
hangs and my local machines memory consumption grows to 10GB+.
> The mutation is never put into accumulo.
> *The file I am ingesting can be found here (needs to be unzipped):* http://www.epa.gov/ttn/atw/nata2005/emissions_mdbzip/2005natav3_ei_ca.zip
>  
> *I’ve attached a snippet of code used to ingest the data here:* http://pastebin.com/Yh4V6nng
> *Initial Investigation:*
> While attempting to upload the file, the thread which sends the mutation to the tablet
‘waits’ in the waitRTE() method which is called by synchronized void flush() in TabletServerBatchWriter.java
and is never ‘woken up’ by a notify call. While ‘waiting’ my local machines memory
allocation grows to 10 GB+. 
> *Thread Stack Trace (from java profiler):*
> java.nio.Bits.copyFromArray(Bits.java:699)
> java.nio.DirectByteBuffer.put(DirectByteBuffer.java:360)
> java.nio.DirectByteBuffer.put(DirectByteBuffer.java:331)
> sun.nio.ch.IOUtil.write(IOUtil.java:35)
> sun.nio.ch.SocketChannelImpl.write(SocketChannelImpl.java:336)
> org.apache.hadoop.net.SocketOutputStream$Writer.performIO(SocketOutputStream.java:55)
> org.apache.hadoop.net.SocketIOWithTimeout.doIO(SocketIOWithTimeout.java:142)
> org.apache.hadoop.net.SocketOutputStream.write(SocketOutputStream.java:146)
> org.apache.hadoop.net.SocketOutputStream.write(SocketOutputStream.java:107)
> java.io.BufferedOutputStream.write(BufferedOutputStream.java:105)
> org.apache.thrift.transport.TIOStreamTransport.write(TIOStreamTransport.java:145)
> org.apache.thrift.transport.TFramedTransport.flush(TFramedTransport.java:157)
> org.apache.accumulo.core.client.impl.ThriftTransportPool$CachedTTransport.flush(ThriftTransportPool.java:299)
> org.apache.accumulo.core.tabletserver.thrift.TabletClientService$Client.send_applyUpdates(TabletClientService.java:449)
> org.apache.accumulo.core.tabletserver.thrift.TabletClientService$Client.applyUpdates(TabletClientService.java:436)
> sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
> sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
> java.lang.reflect.Method.invoke(Method.java:597)
> org.apache.accumulo.cloudtrace.instrument.thrift.TraceWrap$2.invoke(TraceWrap.java:84)
> com.sun.proxy.$Proxy7.applyUpdates(Unknown Source)
> org.apache.accumulo.core.client.impl.TabletServerBatchWriter$MutationWriter.sendMutationsToTabletServer(TabletServerBatchWriter.java:768)
> org.apache.accumulo.core.client.impl.TabletServerBatchWriter$MutationWriter.access$1400(TabletServerBatchWriter.java:536)
> org.apache.accumulo.core.client.impl.TabletServerBatchWriter$MutationWriter$SendTask.send(TabletServerBatchWriter.java:700)
> org.apache.accumulo.core.client.impl.TabletServerBatchWriter$MutationWriter$SendTask.run(TabletServerBatchWriter.java:671)
> java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:439)
> java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303)
> java.util.concurrent.FutureTask.run(FutureTask.java:138)
> java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:895)
> java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:918)
> java.lang.Thread.run(Thread.java:680)
> *Tserver log error:*
> 2013-04-26 15:36:25,253 [server.TNonblockingServer] ERROR: Unexpected exception while
invoking!
> java.lang.RuntimeException: No Such SessionID
> 	at org.apache.accumulo.server.tabletserver.TabletServer$ThriftClientHandler.applyUpdates(TabletServer.java:1433)
> 	at sun.reflect.GeneratedMethodAccessor12.invoke(Unknown Source)
> 	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
> 	at java.lang.reflect.Method.invoke(Method.java:601)
> 	at org.apache.accumulo.cloudtrace.instrument.thrift.TraceWrap$1.invoke(TraceWrap.java:59)
> 	at com.sun.proxy.$Proxy2.applyUpdates(Unknown Source)
> 	at org.apache.accumulo.core.tabletserver.thrift.TabletClientService$Processor$applyUpdates.process(TabletClientService.java:2315)
> 	at org.apache.accumulo.core.tabletserver.thrift.TabletClientService$Processor.process(TabletClientService.java:2037)
> 	at org.apache.accumulo.server.util.TServerUtils$TimedProcessor.process(TServerUtils.java:154)
> 	at org.apache.thrift.server.TNonblockingServer$FrameBuffer.invoke(TNonblockingServer.java:631)
> 	at org.apache.accumulo.server.util.TServerUtils$THsHaServer$Invocation.run(TServerUtils.java:202)
> 	at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
> 	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
> 	at org.apache.accumulo.core.util.LoggingRunnable.run(LoggingRunnable.java:34)
> 	at java.lang.Thread.run(Thread.java:722)

--
This message is automatically generated by JIRA.
If you think it was sent incorrectly, please contact your JIRA administrators
For more information on JIRA, see: http://www.atlassian.com/software/jira

Mime
View raw message