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References: <2404d037efc74212b3c091d01727d43f@git.apache.org>
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From: Sean Busbey <busbey+ml@clouderagovt.com>
Date: Fri, 15 Nov 2013 23:41:21 -0600
Message-ID: 
 <CABwccFExM22teDqw-VGYL=fC0HwwTcZmNL-5m0eG1si6YLNJPQ@mail.gmail.com>
Subject: Re: [4/4] git commit: Merge branch '1.4.5-SNAPSHOT' into
 1.5.1-SNAPSHOT
To: "dev@accumulo apache. org" <dev@accumulo.apache.org>
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Just a note on not hitting any failed tests: without ACCUMULO-1878, the
mismatch between RandomBatchWriter and RandomBatchReader just fails
silently in the functional tests.


On Fri, Nov 15, 2013 at 11:36 PM, Josh Elser <josh.elser@gmail.com> wrote:

> Obviously I saw the conflict as I had thought I had correctly resolved it.
> I guess not.
>
> I had also assumed that a test would have failed on me if I had merged it
> incorrectly. Also an incorrect assumption, apparently.
>
> I don't really remember anymore, I think I took the changes from 1.4.5.
> Sorry for catching you mid-merge.
>
>
> On 11/15/2013 3:42 PM, Keith Turner wrote:
>
>> Josh,
>>
>> The conflict from the merge was not resolved correctly.  I was working on
>> resolving this conflict but you pushed before I did.   I am really curious
>> what happened, I want to make sure we are not dropping important changes
>> when resolving conflicts during merge.  When merging 1.4 to 1.5 I saw the
>> following conflict.   Did you see this conflict?
>>
>> <<<<<<<
>> HEAD:examples/simple/src/main/java/org/apache/accumulo/
>> examples/simple/client/RandomBatchWriter.java
>>      for (int i = 0; i < opts.num; i++) {
>>
>>        long rowid = (Math.abs(r.nextLong()) % (opts.max - opts.min)) +
>> opts.min;
>> =======
>>      // Generate num unique row ids in the given range
>>      HashSet<Long> rowids = new HashSet<Long>(num);
>>      while (rowids.size() < num) {
>>        rowids.add((Math.abs(r.nextLong()) % (max - min)) + min);
>>      }
>>      for (long rowid : rowids) {
>>
>>>
>>>>>>>>>  origin/1.4.5-SNAPSHOT:src/examples/simple/src/main/java/
>> org/apache/accumulo/examples/simple/client/RandomBatchWriter.java
>>
>> Keith
>>
>>
>>
>> On Fri, Nov 15, 2013 at 2:43 PM, <elserj@apache.org> wrote:
>>
>>  Merge branch '1.4.5-SNAPSHOT' into 1.5.1-SNAPSHOT
>>>
>>> Conflicts:
>>>
>>> examples/simple/src/main/java/org/apache/accumulo/examples/
>>> simple/client/RandomBatchWriter.java
>>>
>>>
>>> Project: http://git-wip-us.apache.org/repos/asf/accumulo/repo
>>> Commit: http://git-wip-us.apache.org/repos/asf/accumulo/commit/1261625b
>>> Tree: http://git-wip-us.apache.org/repos/asf/accumulo/tree/1261625b
>>> Diff: http://git-wip-us.apache.org/repos/asf/accumulo/diff/1261625b
>>>
>>> Branch: refs/heads/1.5.1-SNAPSHOT
>>> Commit: 1261625b30691d57473efed313f3baf841d791e6
>>> Parents: ac20fe0 a40a6d4
>>> Author: Josh Elser <elserj@apache.org>
>>> Authored: Fri Nov 15 11:43:10 2013 -0800
>>> Committer: Josh Elser <elserj@apache.org>
>>> Committed: Fri Nov 15 11:43:10 2013 -0800
>>>
>>> ----------------------------------------------------------------------
>>>   .../simple/client/RandomBatchWriter.java        |  1 +
>>>   .../minicluster/MiniAccumuloClusterGCTest.java  | 31
>>> ++++++++++++++++----
>>>   2 files changed, 27 insertions(+), 5 deletions(-)
>>> ----------------------------------------------------------------------
>>>
>>>
>>>
>>> http://git-wip-us.apache.org/repos/asf/accumulo/blob/
>>> 1261625b/examples/simple/src/main/java/org/apache/accumulo/
>>> examples/simple/client/RandomBatchWriter.java
>>> ----------------------------------------------------------------------
>>> diff --cc
>>> examples/simple/src/main/java/org/apache/accumulo/examples/
>>> simple/client/RandomBatchWriter.java
>>> index 886c4ba,0000000..f9acfd9
>>> mode 100644,000000..100644
>>> ---
>>> a/examples/simple/src/main/java/org/apache/accumulo/
>>> examples/simple/client/RandomBatchWriter.java
>>> +++
>>> b/examples/simple/src/main/java/org/apache/accumulo/
>>> examples/simple/client/RandomBatchWriter.java
>>> @@@ -1,169 -1,0 +1,170 @@@
>>>   +/*
>>>   + * Licensed to the Apache Software Foundation (ASF) under one or more
>>>   + * contributor license agreements.  See the NOTICE file distributed
>>> with
>>>   + * this work for additional information regarding copyright ownership.
>>>   + * The ASF licenses this file to You under the Apache License, Version
>>> 2.0
>>>   + * (the "License"); you may not use this file except in compliance
>>> with
>>>   + * the License.  You may obtain a copy of the License at
>>>   + *
>>>   + *     http://www.apache.org/licenses/LICENSE-2.0
>>>   + *
>>>   + * Unless required by applicable law or agreed to in writing, software
>>>   + * distributed under the License is distributed on an "AS IS" BASIS,
>>>   + * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or
>>> implied.
>>>   + * See the License for the specific language governing permissions and
>>>   + * limitations under the License.
>>>   + */
>>>   +package org.apache.accumulo.examples.simple.client;
>>>   +
>>>   +import java.util.HashMap;
>>>   +import java.util.HashSet;
>>>   +import java.util.Map.Entry;
>>>   +import java.util.Random;
>>>   +import java.util.Set;
>>>   +
>>>   +import org.apache.accumulo.core.cli.BatchWriterOpts;
>>>   +import org.apache.accumulo.core.cli.ClientOnRequiredTable;
>>>   +import org.apache.accumulo.core.client.AccumuloException;
>>>   +import org.apache.accumulo.core.client.AccumuloSecurityException;
>>>   +import org.apache.accumulo.core.client.BatchWriter;
>>>   +import org.apache.accumulo.core.client.Connector;
>>>   +import org.apache.accumulo.core.client.MutationsRejectedException;
>>>   +import org.apache.accumulo.core.client.TableNotFoundException;
>>>   +import org.apache.accumulo.core.client.security.SecurityErrorCode;
>>>   +import org.apache.accumulo.core.data.KeyExtent;
>>>   +import org.apache.accumulo.core.data.Mutation;
>>>   +import org.apache.accumulo.core.data.Value;
>>>   +import org.apache.accumulo.core.security.ColumnVisibility;
>>>   +import org.apache.hadoop.io.Text;
>>>   +
>>>   +import com.beust.jcommander.Parameter;
>>>   +
>>>   +/**
>>>   + * Simple example for writing random data to Accumulo. See
>>> docs/examples/README.batch for instructions.
>>>   + *
>>>   + * The rows of the entries will be randomly generated numbers between
>>> a
>>> specified min and max (prefixed by "row_"). The column families will be
>>> "foo" and column
>>>   + * qualifiers will be "1". The values will be random byte arrays of a
>>> specified size.
>>>   + */
>>>   +public class RandomBatchWriter {
>>>   +
>>>   +  /**
>>>   +   * Creates a random byte array of specified size using the specified
>>> seed.
>>>   +   *
>>>   +   * @param rowid
>>>   +   *          the seed to use for the random number generator
>>>   +   * @param dataSize
>>>   +   *          the size of the array
>>>   +   * @return a random byte array
>>>   +   */
>>>   +  public static byte[] createValue(long rowid, int dataSize) {
>>>   +    Random r = new Random(rowid);
>>>   +    byte value[] = new byte[dataSize];
>>>   +
>>>   +    r.nextBytes(value);
>>>   +
>>>   +    // transform to printable chars
>>>   +    for (int j = 0; j < value.length; j++) {
>>>   +      value[j] = (byte) (((0xff & value[j]) % 92) + ' ');
>>>   +    }
>>>   +
>>>   +    return value;
>>>   +  }
>>>   +
>>>   +  /**
>>>   +   * Creates a mutation on a specified row with column family "foo",
>>> column qualifier "1", specified visibility, and a random value of
>>> specified
>>> size.
>>>   +   *
>>>   +   * @param rowid
>>>   +   *          the row of the mutation
>>>   +   * @param dataSize
>>>   +   *          the size of the random value
>>>   +   * @param visibility
>>>   +   *          the visibility of the entry to insert
>>>   +   * @return a mutation
>>>   +   */
>>>   +  public static Mutation createMutation(long rowid, int dataSize,
>>> ColumnVisibility visibility) {
>>>   +    Text row = new Text(String.format("row_%010d", rowid));
>>>   +
>>>   +    Mutation m = new Mutation(row);
>>>   +
>>>   +    // create a random value that is a function of the
>>>   +    // row id for verification purposes
>>>   +    byte value[] = createValue(rowid, dataSize);
>>>   +
>>>   +    m.put(new Text("foo"), new Text("1"), visibility, new
>>> Value(value));
>>>   +
>>>   +    return m;
>>>   +  }
>>>   +
>>>   +  static class Opts extends ClientOnRequiredTable {
>>>   +    @Parameter(names="--num", required=true)
>>>   +    int num = 0;
>>>   +    @Parameter(names="--min")
>>>   +    long min = 0;
>>>   +    @Parameter(names="--max")
>>>   +    long max = Long.MAX_VALUE;
>>>   +    @Parameter(names="--size", required=true, description="size of the
>>> value to write")
>>>   +    int size = 0;
>>>   +    @Parameter(names="--vis", converter=VisibilityConverter.class)
>>>   +    ColumnVisibility visiblity = new ColumnVisibility("");
>>>   +    @Parameter(names="--seed", description="seed for pseudo-random
>>> number generator")
>>>   +    Long seed = null;
>>>   +  }
>>>   +
>>>   +  /**
>>>   +   * Writes a specified number of entries to Accumulo using a {@link
>>> BatchWriter}.
>>>   +   *
>>>   +   * @throws AccumuloException
>>>   +   * @throws AccumuloSecurityException
>>>   +   * @throws TableNotFoundException
>>>   +   */
>>>   +  public static void main(String[] args) throws AccumuloException,
>>> AccumuloSecurityException, TableNotFoundException {
>>>   +    Opts opts = new Opts();
>>>   +    BatchWriterOpts bwOpts = new BatchWriterOpts();
>>>   +    opts.parseArgs(RandomBatchWriter.class.getName(), args, bwOpts);
>>>   +
>>>   +    Random r;
>>>   +    if (opts.seed == null)
>>>   +      r = new Random();
>>>   +    else {
>>>   +      r = new Random(opts.seed);
>>>   +    }
>>>   +
>>>   +    Connector connector = opts.getConnector();
>>>   +    BatchWriter bw = connector.createBatchWriter(opts.tableName,
>>> bwOpts.getBatchWriterConfig());
>>>   +
>>>   +    // reuse the ColumnVisibility object to improve performance
>>>   +    ColumnVisibility cv = opts.visiblity;
>>>   +
>>>   +    for (int i = 0; i < opts.num; i++) {
>>>   +
>>>   +      long rowid = (Math.abs(r.nextLong()) % (opts.max - opts.min)) +
>>> opts.min;
>>>   +
>>>   +      Mutation m = createMutation(rowid, opts.size, cv);
>>>   +
>>>   +      bw.addMutation(m);
>>>   +
>>>   +    }
>>>   +
>>>   +    try {
>>>   +      bw.close();
>>>   +    } catch (MutationsRejectedException e) {
>>>   +      if (e.getAuthorizationFailuresMap().size() > 0) {
>>>   +        HashMap<String,Set<SecurityErrorCode>> tables = new
>>> HashMap<String,Set<SecurityErrorCode>>();
>>>   +        for (Entry<KeyExtent,Set<SecurityErrorCode>> ke :
>>> e.getAuthorizationFailuresMap().entrySet()) {
>>>   +          Set<SecurityErrorCode> secCodes =
>>> tables.get(ke.getKey().getTableId().toString());
>>>   +          if (secCodes == null) {
>>>   +            secCodes = new HashSet<SecurityErrorCode>();
>>>   +            tables.put(ke.getKey().getTableId().toString(),
>>> secCodes);
>>>   +          }
>>>   +          secCodes.addAll(ke.getValue());
>>>   +        }
>>>   +        System.err.println("ERROR : Not authorized to write to tables
>>> :
>>> " + tables);
>>>   +      }
>>>   +
>>>   +      if (e.getConstraintViolationSummaries().size() > 0) {
>>>   +        System.err.println("ERROR : Constraint violations occurred :
>>> " +
>>> e.getConstraintViolationSummaries());
>>>   +      }
>>> ++      System.exit(1);
>>>   +    }
>>>   +  }
>>>   +}
>>>
>>>
>>> http://git-wip-us.apache.org/repos/asf/accumulo/blob/
>>> 1261625b/minicluster/src/test/java/org/apache/accumulo/minicluster/
>>> MiniAccumuloClusterGCTest.java
>>> ----------------------------------------------------------------------
>>> diff --cc
>>> minicluster/src/test/java/org/apache/accumulo/minicluster/
>>> MiniAccumuloClusterGCTest.java
>>> index a579397,0000000..a1f58f6
>>> mode 100644,000000..100644
>>> ---
>>> a/minicluster/src/test/java/org/apache/accumulo/minicluster/
>>> MiniAccumuloClusterGCTest.java
>>> +++
>>> b/minicluster/src/test/java/org/apache/accumulo/minicluster/
>>> MiniAccumuloClusterGCTest.java
>>> @@@ -1,129 -1,0 +1,150 @@@
>>>   +/*
>>>   + * Licensed to the Apache Software Foundation (ASF) under one or more
>>>   + * contributor license agreements.  See the NOTICE file distributed
>>> with
>>>   + * this work for additional information regarding copyright ownership.
>>>   + * The ASF licenses this file to You under the Apache License, Version
>>> 2.0
>>>   + * (the "License"); you may not use this file except in compliance
>>> with
>>>   + * the License.  You may obtain a copy of the License at
>>>   + *
>>>   + *     http://www.apache.org/licenses/LICENSE-2.0
>>>   + *
>>>   + * Unless required by applicable law or agreed to in writing, software
>>>   + * distributed under the License is distributed on an "AS IS" BASIS,
>>>   + * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or
>>> implied.
>>>   + * See the License for the specific language governing permissions and
>>>   + * limitations under the License.
>>>   + */
>>>   +package org.apache.accumulo.minicluster;
>>>   +
>>>   +import java.io.File;
>>>   +import java.util.Map;
>>>   +
>>>   +import org.apache.accumulo.core.client.BatchWriter;
>>>   +import org.apache.accumulo.core.client.BatchWriterConfig;
>>>   +import org.apache.accumulo.core.client.Connector;
>>>   +import org.apache.accumulo.core.client.ZooKeeperInstance;
>>>   +import org.apache.accumulo.core.client.security.tokens.PasswordToken;
>>>   +import org.apache.accumulo.core.conf.Property;
>>>   +import org.apache.accumulo.core.data.Mutation;
>>>   +import org.apache.accumulo.server.util.PortUtils;
>>>   +import org.apache.commons.io.FileUtils;
>>>   +import org.apache.commons.io.filefilter.SuffixFileFilter;
>>>   +import org.apache.commons.io.filefilter.TrueFileFilter;
>>>   +import org.apache.log4j.Level;
>>>   +import org.apache.log4j.Logger;
>>> - import org.junit.AfterClass;
>>>   +import org.junit.Assert;
>>> - import org.junit.BeforeClass;
>>> ++import org.junit.Ignore;
>>>   +import org.junit.Test;
>>>   +import org.junit.rules.TemporaryFolder;
>>>   +
>>>   +import com.google.common.collect.ImmutableMap;
>>> ++import com.google.common.io.Files;
>>>   +
>>>   +/**
>>>   + *
>>>   + */
>>>   +public class MiniAccumuloClusterGCTest {
>>>   +
>>> ++  @Test
>>> ++  public void testGcConfig() throws Exception {
>>> ++    File f = Files.createTempDir();
>>> ++    f.deleteOnExit();
>>> ++    try {
>>> ++      MiniAccumuloConfig macConfig = new MiniAccumuloConfig(f, passwd);
>>> ++      macConfig.setNumTservers(1);
>>> ++
>>> ++      Assert.assertEquals(false, macConfig.shouldRunGC());
>>> ++
>>> ++      // Turn on the garbage collector
>>> ++      macConfig.runGC(true);
>>> ++
>>> ++      Assert.assertEquals(true, macConfig.shouldRunGC());
>>> ++    } finally {
>>> ++      if (null != f && f.exists()) {
>>> ++        f.delete();
>>> ++      }
>>> ++    }
>>> ++  }
>>> ++
>>> ++
>>>   +  private static TemporaryFolder tmpDir = new TemporaryFolder();
>>>   +  private static MiniAccumuloConfig macConfig;
>>>   +  private static MiniAccumuloCluster accumulo;
>>>   +  private static final String passwd = "password";
>>>   +
>>> -   @BeforeClass
>>>   +  public static void setupMiniCluster() throws Exception {
>>>   +    tmpDir.create();
>>>   +    Logger.getLogger("org.apache.zookeeper").setLevel(Level.ERROR);
>>>   +
>>>   +    macConfig = new MiniAccumuloConfig(tmpDir.getRoot(), passwd);
>>>   +    macConfig.setNumTservers(1);
>>>   +
>>>   +    // Turn on the garbage collector
>>>   +    macConfig.runGC(true);
>>>   +
>>>   +    String gcPort = Integer.toString(PortUtils.getRandomFreePort());
>>>   +
>>>   +    // And tweak the settings to make it run often
>>>   +    Map<String,String> config =
>>> ImmutableMap.of(Property.GC_CYCLE_DELAY.getKey(), "1s",
>>> Property.GC_CYCLE_START.getKey(), "0s", Property.GC_PORT.getKey(),
>>> gcPort);
>>>   +    macConfig.setSiteConfig(config);
>>>   +
>>>   +    accumulo = new MiniAccumuloCluster(macConfig);
>>>   +    accumulo.start();
>>>   +  }
>>>   +
>>> -   @AfterClass
>>>   +  public static void tearDownMiniCluster() throws Exception {
>>>   +    accumulo.stop();
>>>   +    tmpDir.delete();
>>>   +  }
>>>   +
>>> -   @Test(timeout = 20000)
>>> ++  // This test seems to be a little too unstable for a unit test
>>> ++  @Ignore
>>>   +  public void test() throws Exception {
>>>   +    ZooKeeperInstance inst = new
>>> ZooKeeperInstance(accumulo.getInstanceName(), accumulo.getZooKeepers());
>>>   +    Connector c = inst.getConnector("root", new
>>> PasswordToken(passwd));
>>>   +
>>>   +    final String table = "foobar";
>>>   +    c.tableOperations().create(table);
>>>   +
>>>   +    BatchWriter bw = null;
>>>   +
>>>   +    // Add some data
>>>   +    try {
>>>   +      bw = c.createBatchWriter(table, new BatchWriterConfig());
>>>   +      Mutation m = new Mutation("a");
>>>   +      for (int i = 0; i < 50; i++) {
>>>   +        m.put("colf", Integer.toString(i), "");
>>>   +      }
>>>   +
>>>   +      bw.addMutation(m);
>>>   +    } finally {
>>>   +      if (null != bw) {
>>>   +        bw.close();
>>>   +      }
>>>   +    }
>>>   +
>>>   +    final boolean flush = true, wait = true;
>>>   +
>>>   +    // Compact the tables to get some rfiles which we can gc
>>>   +    c.tableOperations().compact(table, null, null, flush, wait);
>>>   +    c.tableOperations().compact("!METADATA", null, null, flush,
>>> wait);
>>>   +
>>>   +    File accumuloDir = new File(tmpDir.getRoot().getAbsolutePath(),
>>> "accumulo");
>>>   +    File tables = new File(accumuloDir.getAbsolutePath(), "tables");
>>>   +
>>>   +    int fileCountAfterCompaction = FileUtils.listFiles(tables, new
>>> SuffixFileFilter(".rf"), TrueFileFilter.TRUE).size();
>>>   +
>>>   +    // Sleep for 4s to let the GC do its thing
>>>   +    for (int i = 1; i < 5; i++) {
>>>   +      Thread.sleep(1000);
>>>   +      int fileCountAfterGCWait = FileUtils.listFiles(tables, new
>>> SuffixFileFilter(".rf"), TrueFileFilter.TRUE).size();
>>>   +
>>>   +      if (fileCountAfterGCWait < fileCountAfterCompaction) {
>>>   +        return;
>>>   +      }
>>>   +    }
>>>   +
>>>   +    Assert.fail("Expected to find less files after compaction and
>>> pause
>>> for GC");
>>>   +  }
>>>   +
>>>   +}
>>>
>>>
>>>
>>


-- 
Sean

--047d7b603becf83ea204eb44c4db--